using BTE TRAPI endpoint for JSON tests

NCATSTranslator · Mar 23, 2021 · 4a535f4 · 4a535f4
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Showing 6 changed files with 16 additions and 13 deletions.
diff --git a/onehop/test_triples/KP/Service_Provider/MyChem.info_API.json b/onehop/test_triples/KP/Service_Provider/MyChem.info_API.json
@@ -1,6 +1,7 @@
 {
-    "url": "https://smart-api.info/ui/8f08d1446e0bb9c2b323713ce83e2bd3",
-    "TRAPI": false,
+    "url": "https://smart-api.info/ui/dc91716f44207d2e1287c727f281d339#/1.0.0/querySmartAPI",
+    "myChem_smartAPI_ID": "8f08d1446e0bb9c2b323713ce83e2bd3",
+    "TRAPI": true,
     "edges": [
         {
             "subject_category": "biolink:ChemicalSubstance",

diff --git a/onehop/test_triples/KP/Service_Provider/MyGene.info_API.json b/onehop/test_triples/KP/Service_Provider/MyGene.info_API.json
@@ -1,6 +1,7 @@
 {
-    "url": "https://smart-api.info/ui/59dce17363dce279d389100834e43648",
-    "TRAPI": false,
+    "url": "https://smart-api.info/ui/dc91716f44207d2e1287c727f281d339#/1.0.0/querySmartAPI",
+    "myChem_smartAPI_ID": "59dce17363dce279d389100834e43648",
+    "TRAPI": true,
     "edges": [
         {
             "subject_category": "biolink:Gene",

diff --git a/onehop/test_triples/KP/Service_Provider/Ontology_Lookup_Service_API.json b/onehop/test_triples/KP/Service_Provider/Ontology_Lookup_Service_API.json
@@ -1,6 +1,7 @@
 {
-    "url": "https://smart-api.info/ui/1c056ffc7ed0dd1229e71c4752239465",
-    "TRAPI": false,
+    "url": "https://smart-api.info/ui/dc91716f44207d2e1287c727f281d339#/1.0.0/querySmartAPI",
+    "myChem_smartAPI_ID": "1c056ffc7ed0dd1229e71c4752239465",
+    "TRAPI": true,
     "edges": [
         {
             "subject_category": "biolink:Disease",

diff --git a/onehop/test_triples/KP/Service_Provider/OpenTarget_API.json b/onehop/test_triples/KP/Service_Provider/OpenTarget_API.json
@@ -1,6 +1,7 @@
 {
-    "url": "https://smart-api.info/ui/542ba165e1b4227854cf7c0a8addcc79",
-    "TRAPI": false,
+    "url": "https://smart-api.info/ui/dc91716f44207d2e1287c727f281d339#/1.0.0/querySmartAPI",
+    "myChem_smartAPI_ID": "542ba165e1b4227854cf7c0a8addcc79",
+    "TRAPI": true,
     "edges": [
         {
             "subject_category": "biolink:Gene",

diff --git a/onehop/test_triples/KP/Service_Provider/README.md b/onehop/test_triples/KP/Service_Provider/README.md
@@ -1,6 +1,4 @@
-These KPs are not TRAPI APIs. 
-
-The tests described in the JSON files are written as-if these are TRAPI APIs. The expectation there is that a TRAPI query is made through BTE (the endpoint /v1/smartapi/{smartapi_id}/query) using the info in the JSON files. The edge to the "answer" node should have an attribute with the name "api" and value as the name of the API. 
+The JSON files assume that these APIs will be queried through BTE's TRAPI endpoint for querying individual SmartAPIs. They therefore include the url for the BTE endpoint, and the SmartAPI ID for the actual SmartAPI. The edge to the answer/object node should have an "api" attribute, with the name of the SmartAPI as the value. 
 
 Notes:
 - tests are also described as queries that can be made directly to the API, in the additional README files. Notice that many API endpoints do not handle curies (ID prefixes) or predicates. The format of these queries is specified by the x-bte-annotated endpoint in the SmartAPI registry file. 

diff --git a/onehop/test_triples/KP/Service_Provider/mydisease.info_API.json b/onehop/test_triples/KP/Service_Provider/mydisease.info_API.json
@@ -1,6 +1,7 @@
 {
-    "url": "https://smart-api.info/ui/671b45c0301c8624abbd26ae78449ca2",
-    "TRAPI": false,
+    "url": "https://smart-api.info/ui/dc91716f44207d2e1287c727f281d339#/1.0.0/querySmartAPI",
+    "myChem_smartAPI_ID": "671b45c0301c8624abbd26ae78449ca2",
+    "TRAPI": true,
     "edges": [
         {
             "subject_category": "biolink:Disease",