mychem drugcentral bioactivity: switch to new rev operations

NCATS-Tangerine · Dec 19, 2024 · 495ae9b · 495ae9b
1 parent aa8b771
commit 495ae9b
Showing 1 changed file with 12 additions and 41 deletions.
diff --git a/mychem.info/openapi_full.yml b/mychem.info/openapi_full.yml
@@ -334,30 +334,29 @@ paths:
       - "$ref": "#/components/x-bte-kgs-operations/treatsChembl"
       - "$ref": "#/components/x-bte-kgs-operations/treatsChembl-rev"
       - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-activator"
-      # - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-activator-rev"
+      - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-activator-rev"
       - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-agonist"
-      # - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-agonist-rev"
+      - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-agonist-rev"
       - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-antagonist"
-      # - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-antagonist-rev"
+      - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-antagonist-rev"
       - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-antibody"
-      # - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-antibody-rev"
+      - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-antibody-rev"
       - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-antisense-inhibitor"
-      # - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-antisense-inhibitor-rev"
+      - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-antisense-inhibitor-rev"
       - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-binding-agent"
-      # - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-binding-agent-rev"
+      - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-binding-agent-rev"
       - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-inhibitor"
-      # - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-inhibitor-rev"
+      - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-inhibitor-rev"
       - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-inverse-agonist"
-      # - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-inverse-agonist-rev"
+      - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-inverse-agonist-rev"
       - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-modulator"
-      # - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-modulator-rev"
+      - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-modulator-rev"
       - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-negative-modulator"
-      # - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-negative-modulator-rev"
+      - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-negative-modulator-rev"
       - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-opener"
-      # - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-opener-rev"
+      - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-opener-rev"
       - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-positive-modulator"
-      # - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-positive-modulator-rev"
-      - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-rev"
+      - "$ref": "#/components/x-bte-kgs-operations/drugcentral-bioactivity-positive-modulator-rev"
       - "$ref": "#/components/x-bte-kgs-operations/drugcentral-contraindication"
       - "$ref": "#/components/x-bte-kgs-operations/drugcentral-contraindication-rev"
       - "$ref": "#/components/x-bte-kgs-operations/drugcentral-indication"
@@ -2050,34 +2049,6 @@ components:
       ## for POSITIVE MODULATOR
         - qInput: "UniProtKB:P23415"           ## GLRA1 aka NCBIGene:2741
           oneOutput: "UMLS:C0014277"           ## enflurane aka CHEBI:4792
-    drugcentral-bioactivity-rev:
-    - supportBatch: true
-      useTemplating: true
-      inputs:
-      - id: UniProtKB
-        semantic: Gene
-      requestBody:
-        body:
-          q: "{{ queryInputs }}"  ## no prefix
-          scopes: drugcentral.bioactivity.uniprot.uniprot_id
-      outputs:
-      - id: UMLS
-        semantic: SmallMolecule
-      parameters:
-        fields: drugcentral.xrefs.umlscui
-        size: 1000  ## note size limit
-      ## using the same predicate as dgidb's no-relationship-specified. 
-      ## not using physically_interacts_with because it's not clear that all relationships involve a physical interaction between the chem and gene product
-      ## not using affected_by because that's trickier to use with the new qualifier-modeling (can't ask for Edges without any qualifiers)
-      predicate: interacts_with  
-      source: "infores:drugcentral"
-      knowledge_level: knowledge_assertion
-      agent_type: not_provided
-      response_mapping:
-        "$ref": "#/components/x-bte-response-mapping/drugcentral-umls"
-      testExamples:
-        - qInput: "UniProtKB:Q07912"    ## TNK2 aka NCBIGene:10188
-          oneOutput: "UMLS:C4086264"    ## entrectinib aka PUBCHEM.COMPOUND:25141092
     drugcentral-contraindication:
     - supportBatch: true
       useTemplating: true