multiple service provider kps: fix prefix handling for GO IDs

NCATS-Tangerine · Jul 14, 2023 · 3703119 · 3703119
1 parent bd4d5bc
commit 3703119
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Showing 5 changed files with 22 additions and 22 deletions.
diff --git a/go_bp/smartapi.yaml b/go_bp/smartapi.yaml
@@ -586,7 +586,7 @@ components:
         semantic: BiologicalProcess
       requestBody:
         body:
-          q: "{{ queryInputs }}"
+          q: "{{ queryInputs | replPrefix('GO') }}"
           scopes: _id
       outputs:
       - id: GO
@@ -609,7 +609,7 @@ components:
         semantic: BiologicalProcess
       requestBody:
         body:
-          q: "{{ queryInputs }}"
+          q: "{{ queryInputs | replPrefix('GO') }}"
           scopes: _id
       outputs:
       - id: GO
@@ -632,7 +632,7 @@ components:
         semantic: BiologicalProcess
       requestBody:
         body:
-          q: "{{ queryInputs }}"
+          q: "{{ queryInputs | replPrefix('GO') }}"
           scopes: _id
       outputs:
       - id: GO
@@ -659,7 +659,7 @@ components:
         semantic: BiologicalProcess
       requestBody:
         body:
-          q: "{{ queryInputs }}"
+          q: "{{ queryInputs | replPrefix('GO') }}"
           scopes: negatively_regulates.go
       outputs:
       - id: GO
@@ -687,7 +687,7 @@ components:
         semantic: BiologicalProcess
       requestBody:
         body:
-          q: "{{ queryInputs }}"
+          q: "{{ queryInputs | replPrefix('GO') }}"
           scopes: _id
       outputs:
       - id: GO
@@ -714,7 +714,7 @@ components:
         semantic: BiologicalProcess
       requestBody:
         body:
-          q: "{{ queryInputs }}"
+          q: "{{ queryInputs | replPrefix('GO') }}"
           scopes: positively_regulates.go
       outputs:
       - id: GO
@@ -742,7 +742,7 @@ components:
         semantic: BiologicalProcess
       requestBody:
         body:
-          q: "{{ queryInputs }}"
+          q: "{{ queryInputs | replPrefix('GO') }}"
           scopes: _id
       outputs:
       - id: GO
@@ -766,7 +766,7 @@ components:
         semantic: BiologicalProcess
       requestBody:
         body:
-          q: "{{ queryInputs }}"
+          q: "{{ queryInputs | replPrefix('GO') }}"
           scopes: regulates.go
       outputs:
       - id: GO
@@ -791,7 +791,7 @@ components:
         semantic: BiologicalProcess
       requestBody:
         body:
-          q: "{{ queryInputs }}"
+          q: "{{ queryInputs | replPrefix('GO') }}"
           scopes: _id
       outputs:
       - id: GO
@@ -813,7 +813,7 @@ components:
         semantic: BiologicalProcess
       requestBody:
         body:
-          q: "{{ queryInputs }}"
+          q: "{{ queryInputs | replPrefix('GO') }}"
           scopes: part_of.go
       outputs:
       - id: GO

diff --git a/go_cc/smartapi.yaml b/go_cc/smartapi.yaml
@@ -580,7 +580,7 @@ components:
         semantic: CellularComponent
       requestBody:
         body:
-          q: "{{ queryInputs }}"
+          q: "{{ queryInputs | replPrefix('GO') }}"
           scopes: _id
       outputs:
       - id: GO
@@ -602,7 +602,7 @@ components:
         semantic: CellularComponent
       requestBody:
         body:
-          q: "{{ queryInputs }}"
+          q: "{{ queryInputs | replPrefix('GO') }}"
           scopes: _id
       outputs:
       - id: GO
@@ -625,7 +625,7 @@ components:
         semantic: CellularComponent
       requestBody:
         body:
-          q: "{{ queryInputs }}"
+          q: "{{ queryInputs | replPrefix('GO') }}"
           scopes: _id
       outputs:
       - id: GO
@@ -647,7 +647,7 @@ components:
         semantic: CellularComponent
       requestBody:
         body:
-          q: "{{ queryInputs }}"
+          q: "{{ queryInputs | replPrefix('GO') }}"
           scopes: part_of.go
       outputs:
       - id: GO

diff --git a/go_mf/smartapi.yaml b/go_mf/smartapi.yaml
@@ -580,7 +580,7 @@ components:
         semantic: MolecularActivity
       requestBody:
         body:
-          q: "{{ queryInputs }}"
+          q: "{{ queryInputs | replPrefix('GO') }}"
           scopes: _id
       outputs:
       - id: GO
@@ -602,7 +602,7 @@ components:
         semantic: MolecularActivity
       requestBody:
         body:
-          q: "{{ queryInputs }}"
+          q: "{{ queryInputs | replPrefix('GO') }}"
           scopes: _id
       outputs:
       - id: GO
@@ -625,7 +625,7 @@ components:
         semantic: MolecularActivity
       requestBody:
         body:
-          q: "{{ queryInputs }}"
+          q: "{{ queryInputs | replPrefix('GO') }}"
           scopes: _id
       outputs:
       - id: GO
@@ -647,7 +647,7 @@ components:
         semantic: MolecularActivity
       requestBody:
         body:
-          q: "{{ queryInputs }}"
+          q: "{{ queryInputs | replPrefix('GO') }}"
           scopes: part_of.go
       outputs:
       - id: GO

diff --git a/mygene.info/openapi_full.yml b/mygene.info/openapi_full.yml
@@ -957,7 +957,7 @@ components:
             semantic: BiologicalProcess
         requestBody: 
           body: 
-            q: "{{ queryInputs }}"  ## HAS PREFIX (GO)
+            q: "{{ queryInputs | replPrefix('GO') }}"      ## HAS PREFIX (GO)
             scopes: go.BP.id
         outputs: 
           - id: NCBIGene
@@ -1012,7 +1012,7 @@ components:
             semantic: MolecularActivity
         requestBody: 
           body: 
-            q: "{{ queryInputs }}"   ## HAS PREFIX (GO)
+            q: "{{ queryInputs | replPrefix('GO') }}"      ## HAS PREFIX (GO)
             scopes: go.MF.id
         outputs: 
           - id: NCBIGene
@@ -1067,7 +1067,7 @@ components:
             semantic: CellularComponent
         requestBody: 
           body: 
-            q: "{{ queryInputs }}"  ## HAS PREFIX (GO)
+            q: "{{ queryInputs | replPrefix('GO') }}"      ## HAS PREFIX (GO)
             scopes: go.CC.id
         outputs: 
           - id: NCBIGene

diff --git a/quickgo/smartapi.yaml b/quickgo/smartapi.yaml
@@ -54,7 +54,7 @@ components:
       - id: GO
         semantic: MolecularActivity
       parameters:
-        goid: "{{ queryInputs }}"  ## has prefix (GO)
+        goid: "{{ queryInputs | replPrefix('GO') }}"  ## has prefix (GO)
       outputs:
       - id: GO
         semantic: MolecularActivity