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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 234 79

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 59 15

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    17 8

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 217 107

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 202 46

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 17 10

Repositories

Showing 10 of 298 repositories
  • urdr Public

    Timelogging system of NBIS

    NBISweden/urdr’s past year of commit activity
    TypeScript 0 AGPL-3.0 1 52 18 Updated Nov 26, 2024
  • workshop-reproducible-research Public

    NBIS/Elixir course: Tools for Reproducible Research

    NBISweden/workshop-reproducible-research’s past year of commit activity
    HTML 60 CC-BY-4.0 32 0 0 Updated Nov 26, 2024
  • GenErode Public

    GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.

    NBISweden/GenErode’s past year of commit activity
    Python 25 GPL-3.0 7 19 1 Updated Nov 26, 2024
  • sll_vr_reporting_utils Public

    Scripts used to dig out the data needed for the SciLifeLab and VR yearly reports.

    NBISweden/sll_vr_reporting_utils’s past year of commit activity
    Python 0 1 0 0 Updated Nov 26, 2024
  • Earth-Biogenome-Project-pilot Public

    Assembly and Annotation workflows for analysing data in the Earth Biogenome Project pilot project.

    NBISweden/Earth-Biogenome-Project-pilot’s past year of commit activity
    Nextflow 12 GPL-3.0 8 48 (1 issue needs help) 2 Updated Nov 26, 2024
  • workshop-ngsintro Public

    Workshop • Intro to Bioinformatics using NGS data • 5 days

    NBISweden/workshop-ngsintro’s past year of commit activity
    HTML 14 GPL-3.0 6 0 0 Updated Nov 25, 2024
  • workshop_omics_integration Public

    Workshop in omics integration and systems biology

    NBISweden/workshop_omics_integration’s past year of commit activity
    HTML 71 GPL-3.0 35 10 2 Updated Nov 26, 2024
  • sda-uppmax-integration Public
    NBISweden/sda-uppmax-integration’s past year of commit activity
    Go 0 0 1 2 Updated Nov 25, 2024
  • data-submission-documentation Public

    Documentation for data submissions from life science research in public repositories

    NBISweden/data-submission-documentation’s past year of commit activity
    Python 3 0 0 1 Updated Nov 25, 2024
  • sda-cli Public

    User command line interface for the SDA

    NBISweden/sda-cli’s past year of commit activity
    Go 5 AGPL-3.0 1 42 1 Updated Nov 25, 2024
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