v0.4.0

ProtPlot v0.4.0

Diff since v0.3.10

• Depend on Makie instead of GLMakie, and let the user import a backend. (See #23)
• Use recipes to create the Ribbon plot type, with ribbon and ribbon! functions that can take a vector of chains, a chain, or a path to a PDB file.
• ribbon now makes a standard uninteractive 2D plot. Use ribbon_scene for a convenient and interactive scene with a ribbon, or add a ribbon to your own using ribbon!.
• Rework rendering of ribbons.
  • More robust beta strand rendering.
  • Only render helices and strands between the first and last alphacarbon.
  • Extend coils to alphacarbons of other secondary structure elements, making sure the direction matches.
  • Remove "Segments" type, and simply keep track of subchain ranges instead.
  • Cleaner code.
• Use recipes to create the Ramachandran plot type.

Merged pull requests:

• Fix test broken in Makie 0.21 (#24) (@timholy)
• Use plot recipes (#26) (@anton083)

Closed issues:

• Use Makie recipes (#25)

v0.3.10

ProtPlot v0.3.10

Diff since v0.3.9

• Bump GLMakie
• Add camcontrols keyword argument to ribbon function. See README.md for an example.

Merged pull requests:

• CompatHelper: bump compat for GLMakie to 0.10, (keep existing compat) (#21) (@github-actions[bot])
• Add camcontrols keyword to ribbon (#22) (@timholy)

v0.3.9

ProtPlot v0.3.9

Diff since v0.3.8

• Fix kwargs in animate_attention not being splatted.

v0.3.8

ProtPlot v0.3.8

Diff since v0.3.7

• Let keywords (like linewidth_factor) propagate through animate_attention.
• Add ramachandran plot PDB file method

v0.3.7

ProtPlot v0.3.7

Diff since v0.3.6

• Add Ramachandran plot (TODO: use Makie recipes to make it an actual plot)
• Add ability to show last residue rotation frame to animate_attention with the show_rotation_frame argument (false by default)

v0.3.6

ProtPlot v0.3.6

Diff since v0.3.5

• Fix attention plot not clearing.
• Fix curve at end of a ribbon coil element.

v0.3.5

ProtPlot v0.3.5

Diff since v0.3.4

• Fix compatibility with a breaking change that happened in AssigningSecondaryStructure v0.3.3

Merged pull requests:

• Update ss and oxygen stuff (#20) (@anton083)

v0.3.4

ProtPlot v0.3.4

Diff since v0.3.3

• Tweak defaults for attention animation
• Draw a dotted line when there are residues missing, or the inter-residue distance is too high. See #15

Merged pull requests:

• Update .gitignore (#18) (@anton083)
• Handle missing residues, bump version (patch) (#19) (@anton083)

Closed issues:

• Missing residues. (#15)

v0.3.3

ProtPlot v0.3.3

Diff since v0.3.2

• animate_attention: Minor adjustments to defaults, and adding some options.

Merged pull requests:

• Minor adjustments to defaults, and adding some options. (#17) (@murrellb)

v0.3.2

ProtPlot v0.3.2

Diff since v0.3.1

• Add animate_attention function for animating the construction of proteins.