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Fixed the DOI exports #2058

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merged 3 commits into from
Sep 21, 2023
Merged

Fixed the DOI exports #2058

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d5023db
Fix dois_tofile
vladsavelyev Sep 20, 2023
fb0291d
Changelog
vladsavelyev Sep 21, 2023
1e975d1
Merge branch 'master' into fix-doi-to-files
vladsavelyev Sep 21, 2023
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2 changes: 1 addition & 1 deletion multiqc/multiqc.py
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Original file line number Diff line number Diff line change
Expand Up @@ -868,7 +868,7 @@ def __rich_measure__(self, console: rich.console.Console, options: rich.console.
report.data_sources_tofile()

# Create a file with the module DOIs
report.dois_tofile()
report.dois_tofile(report.modules_output)

if config.make_report:
# Compress the report plot JSON data
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2 changes: 1 addition & 1 deletion multiqc/utils/report.py
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Expand Up @@ -472,7 +472,7 @@ def data_sources_tofile():
print(body.encode("utf-8", "ignore").decode("utf-8"), file=f)


def dois_tofile():
def dois_tofile(modules_output):
"""Find all DOIs listed in report sections and write to a file"""
# Collect DOIs
dois = {"MultiQC": ["10.1093/bioinformatics/btw354"]}
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