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Update pinned dependencies (#853) #443

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Update pinned dependencies (#853)

Update pinned dependencies (#853) #443

Workflow file for this run

.github/workflows/main.yml at 0fc9b47
name: CI
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
# Allow rebuilds via API.
repository_dispatch:
types: rebuild
concurrency:
group: run_tests-${{ github.ref }}
cancel-in-progress: true
jobs:
build:
strategy:
matrix:
include:
- os: ubuntu-latest
label: linux-64
#- os: macos-latest
# label: osx-64
# prefix: /Users/runner/miniconda3/envs/my-env
#- os: windows-latest
# label: win-64
# prefix: C:\Miniconda3\envs\my-env
name: ${{ matrix.label }}
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@main
with:
fetch-depth: 0
- name: Install Conda environment with Micromamba
uses: conda-incubator/setup-miniconda@v3
with:
environment-file: github_environment.yml
miniforge-version: latest
- name: Configure mfa
shell: bash -l {0}
run: python -m montreal_forced_aligner configure --disable_auto_server
- name: Initialize database
shell: bash -l {0}
run: python -m montreal_forced_aligner server init -p test
- name: Check database config
shell: bash -l {0}
run: cat ~/Documents/MFA/pg_mfa_test/postgresql.conf
- name: Check init database log
shell: bash -l {0}
run: cat ~/Documents/MFA/pg_init_log_test.txt
- name: Check database start log
shell: bash -l {0}
run: cat ~/Documents/MFA/pg_log_test.txt
- name: Run tests
env:
GITHUB_TOKEN: ${{ secrets.MFA_GITHUB_TOKEN }}
shell: bash -l {0}
run: pytest -x ./tests
- name: Stop database
shell: bash -l {0}
run: python -m montreal_forced_aligner server stop -p test
- name: Check init database log
shell: bash -l {0}
run: cat ~/Documents/MFA/pg_init_log_test.txt
- name: Check database start log
shell: bash -l {0}
run: cat ~/Documents/MFA/pg_log_test.txt
- name: "Upload coverage to Codecov"
uses: "codecov/codecov-action@v3"
with:
file: ./coverage.xml
fail_ci_if_error: false