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README.md

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 # Workshop: Bioimage analysis applications based on machine learning
 
+* Day 1, part 1
+  * Content
+    * Introduction
+    * Features and scale-space
+    * Ilastik
+    * Clustering
+  * Materials 
+    * [Slides day 1, part 1](https://github.com/MontpellierRessourcesImagerie/mri-workshop-machine-learning/blob/master/day01/part01/presentation.pdf)
+    * [Exercises day 1, part 1](https://github.com/MontpellierRessourcesImagerie/mri-workshop-machine-learning/blob/master/day01/part01/exercises.pdf)
+* Day 1, part 2
+  * Content
+    * Support Vector Machines
+    * Random Forest
+    * ML with python and jupyter notebook
+    * CellProfiler Analyst
+  * Materials
+    * [Slides day 1, part 2](https://github.com/MontpellierRessourcesImagerie/mri-workshop-machine-learning/blob/master/day01/part02/ML/Presentation/Introduction%20to%20Support%20Vector%20Machines%20%26%20Random%20Forest.pdf)
+    * Exercises day 1, part 2 
+      * [jupyter notebook](https://github.com/MontpellierRessourcesImagerie/mri-workshop-machine-learning/blob/master/day01/part02/exercises/svm/notebooks/Transfluor_assay_soluce.ipynb)
+        * [pdf print of the notebook](https://github.com/MontpellierRessourcesImagerie/mri-workshop-machine-learning/blob/master/day01/part02/exercises/svm/notebooks/Transfluor_assay_soluce.pdf)
+      * [CellProfiler Analyst](https://github.com/MontpellierRessourcesImagerie/mri-workshop-machine-learning/blob/master/day01/part02/exercises/rf/translocation_activity.pdf)
+* Day 2
+    * Content
+      * Deep Learning Fundamentals
+      * Deep Learning with convolutional networks
+    * Materials
+      * [Formation_Deep_Learning_07062019_Part_1.pdf](https://github.com/MontpellierRessourcesImagerie/mri-workshop-machine-learning/blob/master/day02/Support%20formation/Formation_Deep_Learning_07062019_Part_1.pdf)
+      * [Formation_Deep_Learning_07062019_Part_2.pdf](https://github.com/MontpellierRessourcesImagerie/mri-workshop-machine-learning/blob/master/day02/Support%20formation/Formation_Deep_Learning_07062019_Part_2.pdf)