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ModelSEED

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  1. ModelSEEDDatabase ModelSEEDDatabase Public

    This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach

    HTML 57 40

  2. Model-SEED-core Model-SEED-core Public archive

    The Model SEED is a tool for building, curating, and analyzing gonome-scale metabolic models. Visit the Model SEED homepage for installation instructions and full feature documentation.

    Perl 19 10

  3. ModelSEEDpy ModelSEEDpy Public

    Python package for building and analyzing models using ModelSEED

    Python 19 17

  4. ModelSEED-UI ModelSEED-UI Public

    ModelSEED UI (beta)

    HTML 8 7

  5. PlantSEED PlantSEED Public

    Repository for containing code and files that pertain to the use of PlantSEED in the ModelSEED environment

    Perl 6 7

  6. ModelSeedApi ModelSeedApi Public

    Application Programming Interface to the Model Seed

    Perl 4 1

Repositories

Showing 10 of 46 repositories
  • ModelSEEDpy Public

    Python package for building and analyzing models using ModelSEED

    ModelSEED/ModelSEEDpy’s past year of commit activity
    Python 19 MIT 17 5 5 Updated Nov 7, 2024
  • KBaseNotebooks Public
    ModelSEED/KBaseNotebooks’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 5, 2024
  • editEscher Public

    A library for editing Escher Metabolic Network maps

    ModelSEED/editEscher’s past year of commit activity
    0 0 0 0 Updated Oct 25, 2024
  • ModelSEEDDatabase Public

    This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach

    ModelSEED/ModelSEEDDatabase’s past year of commit activity
    HTML 57 40 23 2 Updated Oct 17, 2024
  • ModelSEED2Notebooks Public
    ModelSEED/ModelSEED2Notebooks’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Oct 8, 2024
  • MicrobiomeNotebooks Public
    ModelSEED/MicrobiomeNotebooks’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 23, 2024
  • AGORA2_genomes Public

    The genomes associated with the AGORA2 gut microbiome models

    ModelSEED/AGORA2_genomes’s past year of commit activity
    0 0 0 0 Updated Sep 11, 2024
  • MSGoogleColab Public
    ModelSEED/MSGoogleColab’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Sep 4, 2024
  • PlantSEED Public

    Repository for containing code and files that pertain to the use of PlantSEED in the ModelSEED environment

    ModelSEED/PlantSEED’s past year of commit activity
    Perl 6 7 13 0 Updated Aug 27, 2024
  • MSDatabaseNotebooks Public

    Notebooks that manipulate the ModelSEED Database

    ModelSEED/MSDatabaseNotebooks’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Aug 1, 2024
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