GitHub - ModelDBRepository/150691: Model of arrhythmias in a cardiac cells network (Casaleggio et al. 2014)

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Model of arrhythmias in a cardiac cells network (Casaleggio et al. 2014)

modeldb.science/150691

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Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
.hg_archival.txt		.hg_archival.txt
2cell.hoc		2cell.hoc
2cell.ses		2cell.ses
Readme		Readme
bl2-gvar.hoc		bl2-gvar.hoc
block_distrib.hoc		block_distrib.hoc
cadynam.mod		cadynam.mod
cell.hoc		cell.hoc
default.hoc		default.hoc
distrib.hoc		distrib.hoc
gidfunc.hoc		gidfunc.hoc
halfgapm1.mod		halfgapm1.mod
halfgapspk.mod		halfgapspk.mod
hinton.hoc		hinton.hoc
ik1.mod		ik1.mod
ina.mod		ina.mod
init.hoc		init.hoc
is.mod		is.mod
ix1.mod		ix1.mod
job-caspur.csh		job-caspur.csh
kcum.mod		kcum.mod
mosinit.hoc		mosinit.hoc
myjob		myjob
nacum.mod		nacum.mod
net1.hoc		net1.hoc
nipace.mod		nipace.mod
param.hoc		param.hoc
parinit.hoc		parinit.hoc
parlib.hoc		parlib.hoc
raster.hoc		raster.hoc
single.hoc		single.hoc
sortspike		sortspike
spike2file.hoc		spike2file.hoc
spk.std		spk.std
stim.hoc		stim.hoc
verifygap.hoc		verifygap.hoc

Repository files navigation

Casaleggio A, Hines ML, Migliore M (2014)
Computational Model of Erratic Arrhythmias in a Cardiac Cell Network:
The Role of Gap Junctions
http://dx.plos.org/10.1371/journal.pone.0100288

Models are run in parallel by, for example,
mpiexec -n 4 nrniv -mpi parinit.hoc

This will produce a spk000.dat file which can be sorted with
sortspike spk000.dat spk.dat
with the latter identical to spk.std .

A movie of the spk.std file is seen with

nrngui hinton.hoc
p()

Changelog
---------
2022-05: Updated MOD files to contain valid C++ and be compatible with
         the upcoming versions 8.2 and 9.0 of NEURON.