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Spike exchange methods for a Blue Gene/P supercomputer (Hines et al., 2011)
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Generates figures 3-9 of Hines M, Kumar S, Schuermann F (2011). Comparison of neuronal spike exchange methods on a Blue Gene/P supercomputer. Frontiers in Computational Neuroscience. See http://www.neuron.yale.edu/hg/z/neuron/nrnbgp/ for the NEURON version actually used to carry out the simulation on the Blue Gene/P. Figures 3 and 9 require this version as the hoc code uses several features not yet available in the standard versions. The relevant statements are: init.hoc: {pc.timeout(1)} net.hoc: pc.gid_clear(4) param.hoc and perfrun.hoc: any use of pc.send_time(x) with x > 4 The DCMF_Multicast methods used in the paper are specific to the Blue Gene/P. However the MPI multisend implementation can be used on any MPI installed system. In particular the two-phase exchange method may be useful. The exchange methods are implemented mostly in src/nrniv/bgpdma.cpp . Changelog --------- 2022-05: Updated MOD files to contain valid C++ and be compatible with the upcoming versions 8.2 and 9.0 of NEURON.
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