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The Smith-Waterman dynamic programing algorithm is an optimal sequence alignment method for biological databases, but its computational complexity makes it too slow for pratical purposes. This presents a high performance protein alignment implementation for Graphics Processing Units that improves performance by optimizing the database organizati…
MiguelSMoreira/OpenCL-SmithWaterman-Protein-Alignment
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The Smith-Waterman dynamic programing algorithm is an optimal sequence alignment method for biological databases, but its computational complexity makes it too slow for pratical purposes. This presents a high performance protein alignment implementation for Graphics Processing Units that improves performance by optimizing the database organizati…
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