Update check-bioc.yml #174
Annotations
5 errors and 26 warnings
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Install dependencies pass 2
--- re-building ‘article.Rmd’ using rmarkdown
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Install dependencies pass 2
processing vignette 'article.Rmd' failed with diagnostics:
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Install dependencies pass 2
Vignette re-building failed.
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Install dependencies pass 2
Failed to install 'dar' from local:
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Install dependencies pass 2
Process completed with exit code 1.
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Install dependencies pass 2
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.4:
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Install dependencies pass 2
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-x86_64/contrib/4.4:
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Install dependencies pass 2
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-x86_64/contrib/4.4:
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Install dependencies pass 2
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:
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Install dependencies pass 2
The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "Data Import", and the latter is "Converting Common Data Formats to Phyloseq and TreeSummarizedExperiment". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.4:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-x86_64/contrib/4.4:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-x86_64/contrib/4.4:
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Install dependencies pass 1
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.4:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-x86_64/contrib/4.4:
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Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-x86_64/contrib/4.4:
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Install dependencies pass 1
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:
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Install dependencies pass 1
Label 100 at (1) defined but not used [-Wunused-label]
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Install dependencies pass 1
Label 100 at (1) defined but not used [-Wunused-label]
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Install BiocManager
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:
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Query dependencies
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.4:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-x86_64/contrib/4.4:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-x86_64/contrib/4.4:
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Set BiocVersion
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/bin/macosx/big-sur-x86_64/contrib/4.4:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.19/workflows/bin/macosx/big-sur-x86_64/contrib/4.4:
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Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.19/books/bin/macosx/big-sur-x86_64/contrib/4.4:
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Set BiocVersion
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-x86_64/contrib/4.4:
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