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update validation results for SysBioChalmers/Human-GEM
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@mihai-sysbio @github-actions
mihai-sysbio authored and github-actions[bot] committed Mar 14, 2023
1 parent 2f1f3e5 commit a941fe1
Showing 1 changed file with 9 additions and 258 deletions.
267 changes: 9 additions & 258 deletions results/SysBioChalmers_Human-GEM.json
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Original file line number Diff line number Diff line change
Expand Up @@ -4,275 +4,26 @@
"v1.14.0": {
"standard-GEM": [
{
"0.4": true
"0.5": true
},
{
"test_results": {
"cobrapy-load": {
"cobrapy-load-json": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"errors": []
}
}
}
]
}
},
{
"v1.13.0": {
"standard-GEM": [
{
"0.4": true
},
{
"test_results": {
"cobrapy-load": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"errors": []
}
}
}
]
}
},
{
"v1.12.0": {
"standard-GEM": [
{
"0.4": true
},
{
"test_results": {
"cobrapy-load": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"errors": []
}
}
}
]
}
},
{
"v1.11.0": {
"standard-GEM": [
{
"0.4": true
},
{
"test_results": {
"cobrapy-load": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"errors": []
}
}
}
]
}
},
{
"v1.10.0": {
"standard-GEM": [
{
"0.4": true
},
{
"test_results": {
"cobrapy-load": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"errors": ""
"errors": "\"Extra data: line 1 column 4 (char 3)\""
},
"yamllint": {
"1.29.0": "True",
"errors": []
}
}
}
]
}
},
{
"v1.9.0": {
"standard-GEM": [
{
"0.4": true
},
{
"test_results": {
"cobrapy-load": {
"cobrapy-load-matlab": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"cobrapy-load-sbml": {
"0.26.2": true,
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"errors": []
}
}
}
]
}
},
{
"v1.8.0": {
"standard-GEM": [
{
"0.4": true
},
{
"test_results": {
"cobrapy-load": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"cobrapy-load-yaml": {
"0.26.2": true,
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"errors": []
}
}
}
]
}
},
{
"v1.7.0": {
"standard-GEM": [
{
"0.4": true
},
{
"test_results": {
"cobrapy-load": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"errors": []
}
}
}
]
}
},
{
"v1.6.0": {
"standard-GEM": [
{
"0.4": true
},
{
"test_results": {
"cobrapy-load": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
},
"memote-score": {
"0.13.0": 0.0,
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"errors": []
}
}
}
]
}
},
{
"v1.5.0": {
"standard-GEM": [
{
"0.4": true
},
{
"test_results": {
"cobrapy-load": {
"0.26.2": false,
"errors": "\"Error -3 while decompressing data: incorrect header check\""
},
"cobrapy-validate-sbml": {
"0.26.2": false,
"errors": "\"{'SBML_FATAL': [], 'SBML_ERROR': [], 'SBML_SCHEMA_ERROR': [], 'SBML_WARNING': ['E0 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n', 'E1 (Warning): General SBML conformance (core, L3); RDF does not contain valid ModelHistory; LibSBML expected to read the annotation into a ModelHistory object. Unfortunately, some attributes were not present or correct and the resulting ModelHistory object will not correctly produce the annotation. This functionality will be improved in later versions of libSBML. \\\\nReference: L3V1 Section 6.3\\\\n An invalid ModelHistory element has been stored.\\\\n'], 'COBRA_FATAL': [], 'COBRA_ERROR': [], 'COBRA_WARNING': [], 'COBRA_CHECK': []}\""
Expand All @@ -282,7 +33,7 @@
"errors": ""
},
"yamllint": {
"1.29.0": "True",
"1.29.0": true,
"errors": []
}
}
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