Updated requirements and bumped version

MEDimage/__init__.py

@@ -14,7 +14,7 @@
 logging.getLogger(__name__).addHandler(stream_handler)
 
 __author__ = "MEDomicsLab consortium"
-__version__ = "0.9.0"
+__version__ = "0.9.4"
 __copyright__ = "Copyright (C) MEDomicsLab consortium"
 __license__ = "GNU General Public License 3.0"
 __maintainer__ = "MAHDI AIT LHAJ LOUTFI"

environment.yml

@@ -8,7 +8,7 @@ dependencies:
   - nibabel
   - pandas<2.0.0
   - pillow
-  - pydicom
+  - pydicom>1.2.0, <=1.3.0
   - pywavelets
   - scikit-image
   - scipy
@@ -27,7 +27,7 @@ dependencies:
     - numpyencoder
     - protobuf
     - pycaret
-    - ray
+    - ray[default]
     - scikit_image
     - SimpleITK
     - scikit_learn

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "medimage-pkg"
-version = "0.9.0"
+version = "0.9.4"
 description = "MEDimage is a Python package for processing and extracting features from medical images"
 authors = ["MEDomics Consortium <[email protected]>"]
 license = "GPL-3.0"
@@ -15,38 +15,38 @@ packages = [ {include = "MEDimage"} ]
 
 [tool.poetry.dependencies]
 python = ">=3.8.0,<=3.10"
-isort = "5.10.1"
-ipykernel = "^6.15.1"
-ipywidgets = "^8.0.1"
-jupyter = "^1.0.0"
-matplotlib = "3.7.0"
-networkx = "2.8.5"
-neuroCombat = "0.2.12"
-nibabel = "3.2.2"
-nilearn = "0.10.1"
-numpy = "1.22.4"
-numpyencoder = "0.3.0"
-pandas = "1.5.3"
-Pillow = "9.2.0"
-protobuf = "3.20.*"
-pycaret = "3.0.4"
-pydicom = "1.2.2"
-PyWavelets = "1.1.1"
-ray = "2.5.1"
-scikit-image = "0.18.2"
-scipy = "1.7.0"
-setuptools = "62.2.0"
-SimpleITK = "2.1.1.2"
-scikit_learn = "1.2.2"
-seaborn = "0.13.2"
-Sphinx = "7.2.6"
+numpy = "*"
+isort = "*"
+ipykernel = "*"
+ipywidgets = "*"
+jupyter = "*"
+matplotlib = "*"
+networkx = "*"
+neuroCombat = "*"
+nibabel = "*"
+nilearn = "*"
+numpyencoder = "*"
+pandas = "<2.0.0"
+Pillow = "*"
+protobuf = "*"
+pycaret = "*"
+pydicom = ">1.2.0, <=1.3.0"
+PyWavelets = "*"
+ray = { version = "*", extras = ["default"] }
+scikit_image = "*"
+scipy = "*"
+setuptools = "*"
+SimpleITK = "*"
+scikit_learn = "*"
+seaborn = "*"
+Sphinx = "*"
 sphinx-carousel = "1.2.0"
 sphinx-jsonschema = "1.19.1"
 sphinx-rtd-dark-mode = "1.2.4"
-tqdm = "4.65.0"
-wget = "3.2"
-tabulate = "0.9.0"
-xgboost = "1.7.6"
+tqdm = "*"
+wget = "*"
+tabulate = "*"
+xgboost = "*"
 
 [tool.poetry.dev-dependencies]
 

requirements.txt

@@ -13,9 +13,9 @@ pandas<2.0.0
 Pillow
 protobuf
 pycaret
-pydicom
+pydicom>1.2.0, <=1.3.0
 PyWavelets
-ray
+ray[default]
 scikit_image
 scipy
 setuptools

setup.py

@@ -14,7 +14,7 @@
 
 setup(
     name="MEDimage",
-    version="0.9.0",
+    version="0.9.4",
     author="MEDomics consortium",
     author_email="[email protected]",
     description="Python Open-source package for medical images processing and radiomic features extraction",