Handle dcm2niix not compressing nifti files #2

	name: Test

	on:
	pull_request:
	push:
	schedule:
	# run weekly to ensure that we are still good
	- cron: '1 2 * * 3'

	jobs:
	test:
	runs-on: ubuntu-latest
	env:
	BOTO_CONFIG: /tmp/nowhere
	DATALAD_TESTS_SSH: '1'
	strategy:
	fail-fast: false
	matrix:
	python-version:
	- '3.9'
	- '3.10'
	- '3.11'
	- '3.12'
	# Seems needs work in traits: https://github.com/nipy/heudiconv/pull/799#issuecomment-2447298795
	# - '3.13'
	steps:
	- name: Check out repository
	uses: actions/checkout@v4
	with:
	fetch-depth: 0

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install git-annex
	run: \|
	# The ultimate one-liner setup for NeuroDebian repository
	bash <(wget -q -O- http://neuro.debian.net/_files/neurodebian-travis.sh)
	sudo apt-get update -qq
	sudo apt-get install git-annex-standalone dcm2niix

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip wheel
	pip install -r dev-requirements.txt
	pip install requests # below installs pyld but that assumes we have requests already
	pip install datalad
	pip install coverage pytest

	- name: Configure Git identity
	run: \|
	git config --global user.email "[email protected]"
	git config --global user.name "GitHub Almighty"

	- name: Run tests with coverage
	run: coverage run `which pytest` -s -v heudiconv

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v4
	with:
	fail_ci_if_error: false
	token: ${{ secrets.CODECOV_TOKEN }}

	# vim:set et sts=2:

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