CAT12-docker

Ready-to-use Docker image with the standalone version of the Computational Anatomy Toolbox (CAT) toolbox for SPM. No MATLAB license required.

Find the image in Docker Hub here.

Components

• Ubuntu 20.04 LTS (Focal Fossa)
• MATLAB Compiler Runtime R2017b (version 9.3)
• SPM12 standalone version (SPM12 r7771)
• CAT12 toolbox (CAT12.8 r1933)

Usage

 docker pull jhuguetn/cat12
 ...
 docker run -v /data:/data jhuguetn/cat12 -b /data/matlab_batch_script.m /data/img.nii

Example (segmentation of T1w image)

 docker run -it --rm -v `pwd`/data:/data jhuguetn/cat12 \
 -b /opt/spm/standalone/cat_standalone_segment.m \
 /data/my_dataset/sub-0001/anat/sub-0001_T1w.nii

Credits

Jordi Huguet (BarcelonaBeta Brain Research Center)