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Update 2.1.2_host_prediction_II.md
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vmkhot authored Sep 20, 2024
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Expand Up @@ -337,6 +337,7 @@ Next, we will create a custom blast database using our MAGs fasta file and use b
More resources for blast output formats [here](https://www.metagenomics.wiki/tools/blast/blastn-output-format-6) and [blast manual](https://www.ncbi.nlm.nih.gov/books/NBK279684/table/appendices.T.options_common_to_all_blast/)
> ## sbatch script for blast tasks
>
> ```bash
> #!/bin/bash
> #SBATCH --tasks=1
Expand All @@ -359,6 +360,6 @@ More resources for blast output formats [here](https://www.metagenomics.wiki/too
> $makeblastdb -in $bins_fasta -out $bins_fasta -dbtype nucl
>
> $blastn -db $bins_fasta -query $assembly -out ./2.1_host_prediction/20_blastn/viral_contigs_vs_bins_blastn.out -num_threads 32 -outfmt 6
>
> ```
> {: .source}
{: .solution}

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