Update 2.2.2_Viral_Taxonomy_and_Phylogeny_II.md

_episodes/2.2.2_Viral_Taxonomy_and_Phylogeny_II.md

@@ -327,3 +327,28 @@ Now that we have results from many different tools and programs, we can build a
 > ```
 > {: .source}
 {: .solution}
+
+
+> ## sbatch script for submitting the plotting script
+> ```
+> #!/bin/bash
+> #SBATCH --tasks=1
+> #SBATCH --cpus-per-task=2
+> #SBATCH --partition=short
+> #SBATCH --mem=5G
+> #SBATCH --time=00:10:00
+> #SBATCH --job-name=merge
+> #SBATCH --output=2.2_taxonomy/30_merge_summary/merge.slurm.%j.out
+> #SBATCH --error=2.2_taxonomy/30_merge_summary/merge.slurm.%j.err
+> 
+> # activate the python virtual environment with the packages we need
+> source ../py3env/bin/activate
+> 
+> 
+> python3 ./python_scripts/taxonomy/merge_summary.py
+> 
+> # deactivate the environment
+> deactivate
+> ```
+> {: .source}
+{: .solution}