Code

Slicing fixes#916

Code

Merged

richardjgowers merged 28 commits intoMDAnalysis:developMDAnalysis/mdanalysis:developfrom jdetle:slicing_fixesjdetle/mdanalysis:slicing_fixesCopy head branch name to clipboardAug 2, 2016

+413-314

Commits

Commits on Jul 29, 2016

• Reformatting commit

  jdetle

  committed
  93b52b0

• RMSF fix

  jdetle

  committed
  9a58b1b

• Fixed DCD defaults and documentation.

  jdetle

  committed
  8145421

• Fixed analysis docs

  jdetle

  committed
  0649737

• Check_slice index fix

  jdetle

  committed
  9e7d439

• DCD fix

  jdetle

  committed
  e9b6586

• Changed RMSFarray to reflect correct data

  jdetle

  committed
  04dc85d

• Updated changelog [skip ci]

  jdetle

  committed
  1983709

• Added test for slicing, slowly changing DCD source for timeseries slicing.

  jdetle

  committed
  cb5852e

• DCD.py changes

  jdetle

  committed
  1b1d4f2

• Everything working.

  Show description for 320b1dc
  jdetle

  committed
  320b1dc

• Change to ++

  Show description for 55910a0
  jdetle

  committed
  55910a0

• Elaborated on docs

  jdetle

  committed
  83c7e4f

• Added generator but it appears to not be working, please help.

  jdetle

  committed
  beffbea

• Deprecated skip for step

  jdetle

  committed
  8e24480

• Changed to warnings.warn() because decorator wasnt working

  jdetle

  committed
  d687cc7

• Fixed silly correl bug

  Show description for 6893abd
  jdetle

  committed
  6893abd

• Fixed issue caused by integer division, when stop-start / nframes has no remainder it should remain 1.

  jdetle

  committed
  6b27588

Commits on Jul 30, 2016

• Reduced number of tests by a signifcant margin, removed test of test

  jdetle

  committed
  32fce06

• Fixed incomplete logic

  Show description for 68ae897
  jdetle

  committed
  68ae897

Commits on Jul 31, 2016

• Changes to DCD correl functions

  jdetle

  committed
  6f9e57d

• Changed to logic to take advantage of new default, simplify code.

  jdetle

  committed
  e476ee5

• I made a silly mistake in Timeseries

  jdetle

  committed
  d036859

• More testing

  jdetle

  committed
  0c268ed

• Added comments.

  jdetle

  committed
  d3d4dad

• Undo comment removal [skip ci]

  jdetle

  committed
  6833e3a

Commits on Aug 1, 2016

• Added tests that cause failures

  jdetle

  committed
  76ec586

• Added known failures

  jdetle

  committed
  0f62787