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DOCS: Align.py changes made #4182

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DOCS: Align.py changes made #4182

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10 changes: 7 additions & 3 deletions package/MDAnalysis/analysis/align.py
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Original file line number Diff line number Diff line change
Expand Up @@ -246,9 +246,13 @@ def rotation_matrix(a, b, weights=None):
:meth:`MDAnalysis.core.groups.AtomGroup.rotate` to generate a rotated
selection, e.g. ::

>>> R = rotation_matrix(A.select_atoms('backbone').positions,
>>> B.select_atoms('backbone').positions)[0]
>>> A.atoms.rotate(R)
>>> from MDAnalysisTests.datafiles import TPR, TRR
>>> from MDAnalysis.analysis import align
>>> A = mda.Universe(TPR, TRR)
>>> B = A.copy()
>>> R = align.rotation_matrix(A.select_atoms('backbone').positions,
... B.select_atoms('backbone').positions)[0]
>>> A.atoms.rotate(R) # doctest: +SKIP
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>>> A.atoms.write("rotated.pdb")

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