MDAnalysis · IAlibay · Aug 21, 2020 · Jun 19, 2020 · Jun 22, 2020 · Jun 24, 2020
diff --git a/package/CHANGELOG b/package/CHANGELOG
@@ -72,6 +72,8 @@ Enhancements
   * Added new kwargs `select_remove` and `select_protein` to
     analysis.dihedrals.Janin analysis to give user more fine grained control
     over selections (PR #2899)
+  * Added an RDKit converter that works for any input with all hydrogens
+    explicit in the topology (Issue #2468, PR #2775)
 
 Changes
   * deprecated NumPy type aliases have been replaced with their actual types

diff --git a/package/MDAnalysis/coordinates/RDKit.py b/package/MDAnalysis/coordinates/RDKit.py
diff --git a/package/doc/sphinx/source/conf.py b/package/doc/sphinx/source/conf.py
@@ -346,4 +346,5 @@
                        'https://gsd.readthedocs.io/en/stable/': None,
                        'https://parmed.github.io/ParmEd/html/': None,
                        'https://docs.h5py.org/en/stable': None,
+                       'https://www.rdkit.org/docs/': None,
                        }
diff --git a/package/doc/sphinx/source/documentation_pages/converters.rst b/package/doc/sphinx/source/documentation_pages/converters.rst
@@ -33,4 +33,5 @@ you will have to specify a package name (case-insensitive). ::
    :maxdepth: 1
 
    converters/ParmEdParser
+   converters/RDKitParser
 
diff --git a/package/doc/sphinx/source/documentation_pages/converters/RDKitParser.rst b/package/doc/sphinx/source/documentation_pages/converters/RDKitParser.rst
@@ -0,0 +1,3 @@
+.. automodule:: MDAnalysis.topology.RDKitParser
+
+.. automodule:: MDAnalysis.coordinates.RDKit
diff --git a/package/doc/sphinx/source/documentation_pages/topology/RDKitParser.rst b/package/doc/sphinx/source/documentation_pages/topology/RDKitParser.rst
diff --git a/package/doc/sphinx/source/documentation_pages/topology_modules.rst b/package/doc/sphinx/source/documentation_pages/topology_modules.rst
@@ -43,7 +43,6 @@ topology file format in the *topology_format* keyword argument to
    topology/PDBQTParser
    topology/PQRParser
    topology/PSFParser
-   topology/RDKitParser
    topology/TOPParser
    topology/TPRParser
    topology/TXYZParser
Original file line number	Diff line number	Diff line change
Expand Up		@@ -33,4 +33,5 @@ you will have to specify a package name (case-insensitive). ::
		:maxdepth: 1

		converters/ParmEdParser
		converters/RDKitParser
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,3 @@
		.. automodule:: MDAnalysis.topology.RDKitParser

		.. automodule:: MDAnalysis.coordinates.RDKit