Updated docs

MDAnalysis · Apr 16, 2016 · ff99972 · ff99972
1 parent bf74515
commit ff99972
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Showing 4 changed files with 5 additions and 5 deletions.
diff --git a/package/MDAnalysis/analysis/density.py b/package/MDAnalysis/analysis/density.py
@@ -80,7 +80,7 @@
    :members:
    :inherited-members:
 
-.. versionchanged:: 0.15.0
+.. deprecated:: 0.15.0
     The "permissive" flag is not used anymore (and effectively
     defaults to True); it will be completely removed in 0.16.0.
 

diff --git a/package/MDAnalysis/coordinates/core.py b/package/MDAnalysis/coordinates/core.py
@@ -108,7 +108,7 @@ def reader(filename, **kwargs):
        :class:`~CRD.CRDReader`, and
        :class:`~PDB.PDBReader`, :class:`~GRO.GROReader`,
 
-    .. versionchanged:: 0.15.0
+    .. deprecated:: 0.15.0
     The "permissive" flag is not used anymore (and effectively
     defaults to True); it will be completely removed in 0.16.0.
     """

diff --git a/package/MDAnalysis/core/AtomGroup.py b/package/MDAnalysis/core/AtomGroup.py
@@ -4230,7 +4230,7 @@ def __init__(self, *args, **kwargs):
         .. versionchanged:: 0.11.0
            Added the *is_anchor* and *anchor_name* keywords for finer behavior
            control when unpickling instances of :class:`MDAnalysis.core.AtomGroup.AtomGroup`.
-        .. versionchanged:: 0.15.0
+        .. deprecated:: 0.15.0
           The "permissive" flag is not used anymore (and effectively defaults
            to True); it will be completely removed in 0.16.0.
         """
@@ -4811,7 +4811,7 @@ def load_new(self, filename, **kwargs):
            its specialized file format reader, which typically has more features than the
            :class:`~MDAnalysis.coordinates.base.ChainReader`.
 
-        .. versionchanged:: 0.15.0
+        .. deprecated:: 0.15.0
            The "permissive" flag is not used anymore (and effectively
            defaults to True); it will be completely removed in 0.16.0.
         """

diff --git a/package/MDAnalysis/core/__init__.py b/package/MDAnalysis/core/__init__.py
@@ -386,7 +386,7 @@ def __doc__(self):
             'Bio.PDB': False, 'biopython': False, False: False,
         },
         """
-          This flag is not used anymore and will be removed in 0.16.0.
+          This flag is deprecated and will be removed in 0.16.0.
         """
     ),
     _Flag(
-Original file line number
+Diff line change
@@ Expand Up / @@ -386,7 +386,7 @@ def __doc__(self): @@
                 'Bio.PDB': False, 'biopython': False, False: False,
             },
             """
-              This flag is not used anymore and will be removed in 0.16.0.
+              This flag is deprecated and will be removed in 0.16.0.
             """
         ),
         _Flag(
@@ Expand Down @@