Merge pull request #3668 from aditi2906/issue#3638

replaced atoms.coordinates() with atoms.positions in benchmarks
MDAnalysis · May 16, 2022 · da4312a · da4312a
2 parents 174080c + 6207749
commit da4312a
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/benchmarks/benchmarks/analysis/rms.py b/benchmarks/benchmarks/analysis/rms.py
@@ -34,9 +34,9 @@ def setup(self, num_atoms, weights, center, superposition):
             self.u.trajectory[-1]
             self.B = self.u.atoms.positions.copy()[:num_atoms]
         except:
-            self.A = self.u.atoms.coordinates().copy()[:num_atoms]
+            self.A = self.u.atoms.positions.copy()[:num_atoms]
             self.u.trajectory[-1]
-            self.B = self.u.atoms.coordinates().copy()[:num_atoms]
+            self.B = self.u.atoms.positions.copy()[:num_atoms]
 
     def time_rmsd(self, num_atoms, weights, center, superposition):
         """Benchmark rmsd function using a setup similar to