Skip to content

Commit

Permalink
removed packages that became MDAKits (#406)
Browse files Browse the repository at this point in the history
- update MDAkits & packages page
- since we started this list, 
[pytim](https://marcello-sega.github.io/pytim/) and [MAICoS](https://gitlab.com/maicos-devel/maicos) became MDAKits so they were removed from the list of other packages that work with MDA
  • Loading branch information
orbeckst authored Oct 23, 2024
1 parent b0f858f commit 1a3faf0
Showing 1 changed file with 1 addition and 7 deletions.
8 changes: 1 addition & 7 deletions pages/mdakits.md
Original file line number Diff line number Diff line change
Expand Up @@ -25,8 +25,7 @@ or share it on [{{ site.mailinglists.discussion.name }}]({{ site.mailinglists.di

## Other (non-MDAKit registered) tools using MDAnalysis

Below we list projects that use MDAnalysis and are not registered as MDAKits:

Below we list projects that use MDAnalysis and are not (yet) registered as MDAKits:

### Visualization tools

Expand All @@ -44,9 +43,6 @@ Below we list projects that use MDAnalysis and are not registered as MDAKits:

- [pydiffusion](https://github.com/bio-phys/pydiffusion): Analyze the
rotational diffusion of your molecules.
- [pytim](https://marcello-sega.github.io/pytim/): Pytim is a package based on
MDAnalysis for the identification and analysis of surface molecules in
configuration files or in trajectories from molecular dynamics simulations.
- [pycontact](https://github.com/maxscheurer/pycontact): Analysis of
non-covalent interactions in MD trajectories.
- [RotamerConvolveMD](https://github.com/MDAnalysis/RotamerConvolveMD):
Expand All @@ -65,8 +61,6 @@ Below we list projects that use MDAnalysis and are not registered as MDAKits:
- [PyInteraph](https://github.com/ELELAB/pyinteraph): A software tool
for the analysis of structural communication in protein ensembles,
including a PyMOL plugin and an InteractionPlotter.
- [MAICoS](https://gitlab.com/maicos-devel/maicos): Analyze molecular dynamics simulations of
interfacial and confined systems.
- [taurenmd](https://taurenmd.readthedocs.io/en/latest/): A command-line interface for analysis of Molecular Dynamics simulations.
- [PENSA](https://github.com/drorlab/pensa): A toolkit for exploratory analysis and comparison of protein structural ensembles
- [LiPyphilic](https://lipyphilic.readthedocs.io/en/latest/): A Python package for the analysis of lipid membrane simulations.
Expand Down

0 comments on commit 1a3faf0

Please sign in to comment.