add citation for waterdynamics (#250) #232
IAlibaygh-ci-cron.yaml
on: push
Annotations
14 errors and 7 warnings
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mdakit-ci (mdacli, develop)
The process '/home/runner/miniconda3/condabin/mamba' failed with exit code 1
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mdakit-ci (mdaencore, latest)
Process completed with exit code 1.
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mdakit-ci (helanal, latest)
Process completed with exit code 1.
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mdakit-ci (helanal, latest)
Process completed with exit code 1.
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mdakit-ci (maicos, latest)
Process completed with exit code 2.
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mdakit-ci (helanal, develop)
Process completed with exit code 1.
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mdakit-ci (mda-tui, latest)
Process completed with exit code 1.
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mdakit-ci (prolif, develop)
Process completed with exit code 1.
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mdakit-ci (mda-tui, develop)
Process completed with exit code 1.
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mdakit-ci (pytim, latest)
Process completed with exit code 1.
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mdakit-ci (solvation-analysis, develop)
The process '/home/runner/miniconda3/condabin/mamba' failed with exit code 1
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mdakit-ci (openmm-mdanalysis-reporter, develop)
Process completed with exit code 1.
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mdakit-ci (openmm-mdanalysis-reporter, develop)
Process completed with exit code 4.
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process_results
Process completed with exit code 1.
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env_config
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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mdakit-ci (mdacli, develop)
error libmamba Error when extracting package: Could not chdir info/recipe/parent/tests/libhowdy.c
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mdakit-ci (mdacli, develop)
Found incorrect download: _openmp_mutex. Aborting
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mdakit-ci (mdacli, develop)
# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<
Traceback (most recent call last):
File "/home/runner/miniconda3/lib/python3.12/site-packages/conda/exception_handler.py", line 18, in __call__
return func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 960, in exception_converter
raise e
File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 953, in exception_converter
exit_code = _wrapped_main(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 899, in _wrapped_main
result = do_call(parsed_args, p)
^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 768, in do_call
exit_code = create(args, parser)
^^^^^^^^^^^^^^^^^^^^
File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 603, in create
return install(args, parser, "create")
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 559, in install
transaction.fetch_extract_packages()
RuntimeError: Found incorrect download: _openmp_mutex. Aborting
`$ /home/runner/miniconda3/condabin/mamba create --name test python=3.12`
environment variables:
CIO_TEST=<not set>
CONDA=/home/runner/miniconda3
CONDA_ROOT=/home/runner/miniconda3
CURL_CA_BUNDLE=<not set>
DEPLOYMENT_BASEPATH=/opt/runner
GITHUB_EVENT_PATH=/home/runner/work/_temp/_github_workflow/event.json
GITHUB_PATH=/home/runner/work/_temp/_runner_file_commands/add_path_8c582b61-6416-
4d65-acdd-a759afcba7d9
LD_PRELOAD=<not set>
PATH=/home/runner/miniconda3/condabin:/snap/bin:/home/runner/.local/bin:/op
t/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendo
r/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin
:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/ga
mes:/snap/bin
REQUESTS_CA_BUNDLE=<not set>
SELENIUM_JAR_PATH=/usr/share/java/selenium-server.jar
SSL_CERT_FILE=<not set>
SWIFT_PATH=/usr/share/swift/usr/bin
active environment : None
user config file : /home/runner/.condarc
populated config files : /home/runner/miniconda3/.condarc
/home/runner/.condarc
conda version : 24.11.2
conda-build version : not installed
python version : 3.12.8.final.0
solver : libmamba (default)
virtual packages : __archspec=1=zen2
__conda=24.11.2=0
__glibc=2.35=0
__linux=6.5.0=0
__unix=0=0
base environment : /home/runner/miniconda3 (writable)
conda av data dir : /home/runner/miniconda3/etc/conda
conda av metadata url : None
channel URLs : https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /home/runner/conda_pkgs_dir
envs directories : /home/runner/miniconda3/envs
/home/runner/.conda/envs
platform : linux-64
user-agent : conda/24.11.2 requests/2.32.3 CPython/3.12.8 Linux/6.5.0-1025-azure ubuntu/22.04.5 glibc/2.35 solver/libmamba conda-libmamba-solver/24.9.
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mdakit-ci (solvation-analysis, develop)
error libmamba Error when extracting package: Write failed
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mdakit-ci (solvation-analysis, develop)
Found incorrect download: ld_impl_linux-64. Aborting
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mdakit-ci (solvation-analysis, develop)
# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<
Traceback (most recent call last):
File "/home/runner/miniconda3/lib/python3.12/site-packages/conda/exception_handler.py", line 18, in __call__
return func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 960, in exception_converter
raise e
File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 953, in exception_converter
exit_code = _wrapped_main(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 899, in _wrapped_main
result = do_call(parsed_args, p)
^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 768, in do_call
exit_code = create(args, parser)
^^^^^^^^^^^^^^^^^^^^
File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 603, in create
return install(args, parser, "create")
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 559, in install
transaction.fetch_extract_packages()
RuntimeError: Found incorrect download: ld_impl_linux-64. Aborting
`$ /home/runner/miniconda3/condabin/mamba create --name test python=3.12`
environment variables:
CIO_TEST=<not set>
CONDA=/home/runner/miniconda3
CONDA_ROOT=/home/runner/miniconda3
CURL_CA_BUNDLE=<not set>
DEPLOYMENT_BASEPATH=/opt/runner
GITHUB_EVENT_PATH=/home/runner/work/_temp/_github_workflow/event.json
GITHUB_PATH=/home/runner/work/_temp/_runner_file_commands/add_path_bde3f4bf-1956-
4ed0-aaba-f6e5ebe3b86d
LD_PRELOAD=<not set>
PATH=/home/runner/miniconda3/condabin:/snap/bin:/home/runner/.local/bin:/op
t/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendo
r/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin
:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/ga
mes:/snap/bin
REQUESTS_CA_BUNDLE=<not set>
SELENIUM_JAR_PATH=/usr/share/java/selenium-server.jar
SSL_CERT_FILE=<not set>
SWIFT_PATH=/usr/share/swift/usr/bin
active environment : None
user config file : /home/runner/.condarc
populated config files : /home/runner/miniconda3/.condarc
/home/runner/.condarc
conda version : 24.11.2
conda-build version : not installed
python version : 3.12.8.final.0
solver : libmamba (default)
virtual packages : __archspec=1=zen2
__conda=24.11.2=0
__glibc=2.35=0
__linux=6.5.0=0
__unix=0=0
base environment : /home/runner/miniconda3 (writable)
conda av data dir : /home/runner/miniconda3/etc/conda
conda av metadata url : None
channel URLs : https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /home/runner/conda_pkgs_dir
envs directories : /home/runner/miniconda3/envs
/home/runner/.conda/envs
platform : linux-64
user-agent : conda/24.11.2 requests/2.32.3 CPython/3.12.8 Linux/6.5.0-1025-azure ubuntu/22.04.5 glibc/2.35 solver/libmamba conda-libmamba-solver/24
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