Release v2.0.0 images

.gitignore

@@ -0,0 +1,10 @@
+
+.idea/
+
+**/.DS_Store
+
+built_images.txt
+
+base_images/build-image-local.sh
+
+*.code-workspace

LICENSE

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README.md

@@ -1,2 +1,30 @@
 # maap-workspaces
 Repository dedicated to building maap workspaces. 
+
+## CI/CD setup
+If using gitlab, create a blank project and copy the gitlab ci file to it. 
+Set up a webhook from this repository to trigger pipelines builds on the gitlab project. 
+
+### CI Variables
+
+`FORCE_REF_BUILD`: variable used to force build a specific branch or commit hash.
+
+`BUILD_ALL_BASE_IMAGES`: Builds all images listed under the [base_images](/base_images) dir.
+
+`BUILD_SPECIFIC_BASE_IMAGES`: Comma separated list of base images to build. Names should match dir names under 
+[base_images](/base_images) dir 
+
+
+### Working of CI
+
+Use the above variables to control the execution of a CI pipline when manually triggering a pipline.
+By default, when the CI receives a webhook, it will get the latest commit on the repo and list the files that have changed. 
+
+If files changed match `base_images/*/*` it will trigger a build of those images. 
+Any other files changed currently does not trigger image builds. 
+
+TODO: On files changed under jupyterlab dir, build all images. 
+
+## Devfile publication
+
+To be listed in the ADE stack directory, the devfile and its metadata must be included in the [devfiles](/devfiles) directory. 

base_images/build-image.sh

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+#!/bin/bash
+
+set -ex
+base_image_dir=$(dirname $0)
+# Check if on a branch or in a detached HEAD state get commit sha
+BRANCH=$(basename $(git symbolic-ref -q --short HEAD || git rev-parse --short HEAD))
+DIRS="vanilla r rgedi rsgislib"
+if [[ ! -z "$@" ]]; then
+    DIRS=$@
+fi
+for dir in ${DIRS}; do
+    pushd $base_image_dir/$dir
+    IMAGE_NAME=$(basename $dir)
+    IMAGE_REF=${CI_REGISTRY_IMAGE}/base_images/${IMAGE_NAME}:${BRANCH}
+    docker build -t ${IMAGE_REF} --build-arg IMAGE_REF=${IMAGE_REF} -f docker/Dockerfile .
+    docker push ${IMAGE_REF}
+    popd
+    echo "$IMAGE_REF" >> built_images.txt
+done
+

base_images/isce2/docker/Dockerfile

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+FROM continuumio/miniconda3:22.11.1
+ENV LANG en_US.UTF-8
+ENV TZ US/Pacific
+ARG DEBIAN_FRONTEND=noninteractive
+
+# install maap-py library
+ENV MAAP_CONF='/maap-py/'
+RUN git clone --single-branch --branch master https://github.com/MAAP-Project/maap-py.git \
+    && cd maap-py \
+    && pip install -e .
+
+RUN set -ex \
+ && apt-get update \
+ && apt-get install -y \
+    libfftw3-3=3.3.8-2 \
+    libgdal28=3.2.2+dfsg-2+deb11u2 \
+    libhdf4-0=4.2.15-3 \
+    libhdf5-103=1.10.6+repack-4+deb11u1 \
+    libopencv-core4.5=4.5.1+dfsg-5 \
+    libopencv-highgui4.5=4.5.1+dfsg-5 \
+    libopencv-imgproc4.5=4.5.1+dfsg-5 \
+    python3-gdal=3.2.2+dfsg-2+deb11u2 \
+    python3-h5py=2.10.0-9 \
+    python3-numpy=1:1.19.5-1 \
+    python3-scipy=1.6.0-2 && \
+    apt-get clean
+
+
+RUN mkdir /projects
+WORKDIR /projects
+RUN sed -i -e 's/\/root/\/projects/g' /etc/passwd
+
+RUN conda install -y -c conda-forge mamba=1.3.1
+
+# need to uninstall jupyter_server_terminals as it conflicts with Jupyterlab 3.4.x. Doesn't seem to break anything
+# but can get rid of if/when we upgrade jlab
+RUN mamba install -y -c conda-forge -c plant plant=0.1.89dev isce2=2.6.2 matplotlib=3.5.1 Cython=0.29.28 \
+    numba=0.55.1 pygeos=0.14.0 pyproj=3.4.1 rasterio=1.3.6 && \
+    pip uninstall -y jupyter_server_terminals && \
+    find /opt/conda/ -follow -type f -name '*.a' -delete && \
+    find /opt/conda/ -follow -type f -name '*.js.map' -delete && \
+    /opt/conda/bin/conda clean -afy
+
+ARG IMAGE_REF
+ENV DOCKERIMAGE_PATH=${IMAGE_REF}

base_images/isce3/docker/Dockerfile

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+FROM continuumio/miniconda3:22.11.1
+ENV LANG en_US.UTF-8
+ENV TZ US/Pacific
+ARG DEBIAN_FRONTEND=noninteractive
+
+# install maap-py library
+ENV MAAP_CONF='/maap-py/'
+RUN git clone --single-branch --branch master https://github.com/MAAP-Project/maap-py.git \
+    && cd maap-py \
+    && pip install -e .
+
+RUN set -ex \
+ && apt-get update
+
+RUN mkdir /projects
+WORKDIR /projects
+RUN sed -i -e 's/\/root/\/projects/g' /etc/passwd
+
+RUN conda install -y -c conda-forge mamba=1.4.2
+
+RUN mamba install -y -c conda-forge isce3=0.12.0 xarray=2023.4.2 \
+    hvplot=0.8.3 fsspec=2023.5.0 scikit-learn=1.2.2 && \
+    find /opt/conda/ -follow -type f -name '*.a' -delete && \
+    find /opt/conda/ -follow -type f -name '*.js.map' -delete && \
+    /opt/conda/bin/conda clean -afy
+
+RUN pip install git+https://github.com/opera-adt/[email protected]
+
+ARG IMAGE_REF
+ENV DOCKERIMAGE_PATH=${IMAGE_REF}

base_images/pangeo/docker/Dockerfile

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+FROM continuumio/miniconda3:22.11.1
+ENV LANG en_US.UTF-8
+ENV TZ US/Pacific
+ARG DEBIAN_FRONTEND=noninteractive
+
+# install maap-py library
+ENV MAAP_CONF='/maap-py/'
+RUN git clone --single-branch --branch master https://github.com/MAAP-Project/maap-py.git \
+    && cd maap-py \
+    && pip install -e .
+
+RUN mkdir /projects
+WORKDIR /projects
+RUN sed -i -e 's/\/root/\/projects/g' /etc/passwd
+
+RUN conda install -c conda-forge mamba && \
+    mamba install -c conda-forge -y gdal=3.6.2 matplotlib=3.6.2 Cython=0.29.33 h5py=3.7.0 numba=0.56.4 \
+    pygeos=0.14 pyproj=3.4.1 rasterio=1.3.4 scipy=1.10.0 \
+    && find /opt/conda/ -follow -type f -name '*.a' -delete \
+    && find /opt/conda/ -follow -type f -name '*.js.map' -delete \
+    && /opt/conda/bin/conda clean -afy
+
+ARG IMAGE_REF
+ENV DOCKERIMAGE_PATH=${IMAGE_REF}

base_images/r/docker/Dockerfile

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+FROM continuumio/miniconda3:22.11.1
+ENV LANG en_US.UTF-8
+ENV TZ US/Pacific
+ARG DEBIAN_FRONTEND=noninteractive
+
+# install maap-py library
+ENV MAAP_CONF='/maap-py/'
+RUN git clone --single-branch --branch master https://github.com/MAAP-Project/maap-py.git \
+    && cd maap-py \
+    && pip install -e .
+
+RUN set -ex \
+ && apt-get update
+
+RUN mkdir /projects
+WORKDIR /projects
+RUN sed -i -e 's/\/root/\/projects/g' /etc/passwd
+
+RUN conda install -y -c conda-forge mamba=1.3.1
+
+RUN mamba install -y -c conda-forge r==4.2 r-rgdal==1.5_32 r-sf==1.0_7 r-irkernel==1.3.2 r-gridExtra==2.3 \
+    r-tidyverse==2.0.0 r-randomForest==4.7_1.1 r-raster==3.6_20 r-data.table==1.14.8 r-rlist==0.4.6.2 \
+    r-gdalutils==2.0.3.2 r-stringr==1.5.0 && \
+    find /opt/conda/ -follow -type f -name '*.a' -delete && \
+    find /opt/conda/ -follow -type f -name '*.js.map' -delete && \
+    /opt/conda/bin/conda clean -afy
+
+ARG IMAGE_REF
+ENV DOCKERIMAGE_PATH=${IMAGE_REF}