Avoid nesting donttest and dontrun #43
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| # Runs without suggested packages as these must be handled conditionally | |
| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| #name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| _R_CHECK_CRAN_INCOMING_: false | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| _R_CHECK_DEPENDS_ONLY_: true | |
| steps: | |
| - uses: actions/checkout@v3 | |
| # Always try to use the latest pandoc version | |
| # https://github.com/jgm/pandoc/releases | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| with: | |
| pandoc-version: '3.1.11' | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - name: Install packages from source | |
| run: | | |
| install.packages(c("Matrix", "TMB"), type = "source") | |
| shell: Rscript {0} | |
| # TODO: Check which of the ignore conditions are still relevant given the | |
| # current suggested dependencies and the minimum supported R version. | |
| # Update if anything out of date or not needed anymore. | |
| # | |
| # Fails due to lack of rmarkdown | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| pak-version: devel | |
| cache: false | |
| upgrade: '"TRUE"' | |
| dependencies: '"hard"' | |
| extra-packages: | | |
| any::rcmdcheck | |
| any::testthat | |
| any::knitr | |
| any::rmarkdown | |
| any::xpectr | |
| MuMIn=?ignore-before-r=4.2.0 | |
| Matrix=?ignore-before-r=100.0.0 | |
| needs: check | |
| # install *after* other deps to avoid FreeADFunObject error | |
| # glmmTMB uses `deparse1()`, which was introduced in R 4.0 | |
| - name: Install other packages from source | |
| run: | | |
| if (getRversion() >= "4.0.0") { | |
| install.packages(c("mmrm", "MatrixModels", "glmmTMB", "lme4"), type = "source") | |
| } | |
| shell: Rscript {0} | |
| # Don't error on "note" because if any of the suggested packages are not available | |
| # for a given R version, this generates a NOTE causing unnecessary build failure | |
| - uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| error-on: '"warning"' | |
| upload-snapshots: true |