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New Module: humid (#5493) #12

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New Module: humid (#5493)

New Module: humid (#5493) #12

Run time

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Job Run time
nf-test-changes
7s
prettier
55s
editorconfig
12s
pytest-changes
5s
pre-commit
1m 11s
pytest (arriba/arriba, conda)
1s
pytest (arriba/arriba, docker)
1s
pytest (arriba/arriba, singularity)
1s
pytest (ensemblvep/filtervep, conda)
1s
pytest (ensemblvep/filtervep, docker)
1s
pytest (ensemblvep/filtervep, singularity)
1s
pytest (proteus/readproteingroups, conda)
1s
pytest (proteus/readproteingroups, docker)
1s
pytest (proteus/readproteingroups, singularity)
1s
pytest (seqkit/fx2tab, conda)
1s
pytest (seqkit/fx2tab, docker)
1s
pytest (seqkit/fx2tab, singularity)
1s
pytest (seqkit/tab2fx, conda)
1s
pytest (seqkit/tab2fx, docker)
1s
pytest (seqkit/tab2fx, singularity)
1s
nf-core-lint (arriba/arriba)
1s
nf-core-lint (ensemblvep/filtervep)
1s
nf-core-lint (proteus/readproteingroups)
1s
nf-core-lint (seqkit/fx2tab)
1s
nf-core-lint (seqkit/tab2fx)
1s
nf-core-lint (crabz/decompress)
1s
nf-core-lint (crabz/compress)
1s
nf-core-lint (bbmap/bbmerge)
1s
nf-core-lint (fastqc)
1s
nf-core-lint (gecco/run)
1s
nf-core-lint (phispy)
1s
nf-core-lint (krakentools/extractkrakenreads)
1s
nf-core-lint (toulligqc)
1s
nf-core-lint (amplify/predict)
1s
nf-core-lint (mosdepth)
1s
nf-core-lint (meryl/histogram)
1s
nf-core-lint (meryl/count)
1s
nf-core-lint (meryl/unionsum)
1s
nf-core-lint (summarizedexperiment/summarizedexperiment)
1s
nf-core-lint (vcftools)
1s
nf-core-lint (hmmer/hmmsearch)
1s
nf-core-lint (atlasgeneannotationmanipulation/gtf2featureannotation)
1s
nf-core-lint (bcftools/filter)
1s
nf-core-lint (genomescope2)
1s
nf-core-lint (quartonotebook)
1s
nf-core-lint (gatk4/mutect2)
1s
nf-core-lint (merfin/hist)
1s
nf-core-lint (controlfreec/assesssignificance)
1s
nf-core-lint (controlfreec/freec)
1s
nf-core-lint (controlfreec/makegraph2)
1s
nf-core-lint (controlfreec/freec2circos)
1s
nf-core-lint (controlfreec/makegraph)
1s
nf-core-lint (controlfreec/freec2bed)
1s
nf-core-lint (htsnimtools/vcfcheck)
1s
nf-core-lint (taxonkit/name2taxid)
1s
nf-core-lint (agat/convertspgxf2gxf)
1s
nf-core-lint (agat/convertspgff2tsv)
1s
nf-core-lint (humid)
1s
nf-core-lint (cellranger/vdj)
1s
nf-core-lint (cellranger/mkref)
1s
nf-core-lint (cellranger/count)
1s
nf-core-lint (cellranger/mkvdjref)
1s
nf-core-lint (cellranger/mkgtf)
1s
nf-core-lint (cellranger/multi)
1s
nf-core-lint (anota2seq/anota2seqrun)
1s
nf-core-lint (bracken/combinebrackenoutputs)
1s
nf-core-lint (bracken/bracken)
1s
nf-core-lint (xengsort/index)
1s
nf-core-lint (wfmash)
1s
nf-core-lint (dragmap/hashtable)
1s
nf-core-lint (velocyto)
1s
nf-core-lint (plink/gwas)
1s
nf-core-lint (plink/ld)
1s
nf-core-lint (plink/epistasis)
1s
nf-core-lint (plink/fastepistasis)
1s
nf-core-lint (iqtree)
1s
nf-core-lint (ensemblvep/download)
1s
nf-core-lint (ensemblvep/vep)
1s
nf-core-lint (samtools/faidx)
1s
nf-core-lint (bedops/convert2bed)
1s
nf-core-lint (propr/propd)
1s
nf-core-lint (propr/propr)
1s
nf-core-lint (minimap2/align)
1s
nf-core-lint (minimap2/index)
1s
nf-core-lint (spaceranger/mkref)
1s
nf-core-lint (spaceranger/count)
1s
nf-core-lint (spaceranger/mkgtf)
1s
nf-core-lint (rgi/main)
1s
nf-core-lint (rgi/cardannotation)
1s
nf-core-lint (cobrameta)
1s
nf-core-lint (gtdbtk/classifywf)
1s
nf-core-lint (eggnogmapper)
1s
nf-core-lint (gawk)
1s
nf-core-lint (bamcmp)
1s
nf-core-lint (sratools/prefetch)
1s
nf-core-lint (kraken2/add)
1s
nf-core-lint (kraken2/build)
1s
nf-core-lint (kraken2/kraken2)
1s
nf-core-lint (subworkflows/bam_create_som_pon_gatk)
1s
nf-core-lint (subworkflows/quantify_pseudo_alignment)
1s
nf-core-lint (subworkflows/bam_dedup_stats_samtools_umicollapse)
1s
nf-core-lint (subworkflows/fasta_build_add_kraken2)
1s
nf-core-lint (subworkflows/fastq_align_bowtie2)
1s
nf-core-lint (subworkflows/fastq_align_bamcmp_bwa)
1s
nf-core-lint (subworkflows/fastq_taxonomic_profile_metaphlan)
1s
nf-core-lint (subworkflows/fastq_download_prefetch_fasterqdump_sratools)
1s
nf-test (crabz/decompress, conda)
1s
nf-test (crabz/decompress, docker)
1s
nf-test (crabz/decompress, singularity)
1s
nf-test (crabz/compress, conda)
1s
nf-test (crabz/compress, docker)
1s
nf-test (crabz/compress, singularity)
1s
nf-test (bbmap/bbmerge, conda)
1s
nf-test (bbmap/bbmerge, docker)
1s
nf-test (bbmap/bbmerge, singularity)
1s
nf-test (fastqc, conda)
1s
nf-test (fastqc, docker)
1s
nf-test (fastqc, singularity)
1s
nf-test (gecco/run, conda)
1s
nf-test (gecco/run, docker)
1s
nf-test (gecco/run, singularity)
1s
nf-test (phispy, conda)
1s
nf-test (phispy, docker)
1s
nf-test (phispy, singularity)
1s
nf-test (krakentools/extractkrakenreads, conda)
1s
nf-test (krakentools/extractkrakenreads, docker)
1s
nf-test (krakentools/extractkrakenreads, singularity)
1s
nf-test (toulligqc, conda)
1s
nf-test (toulligqc, docker)
1s
nf-test (toulligqc, singularity)
1s
nf-test (amplify/predict, conda)
1s
nf-test (amplify/predict, docker)
1s
nf-test (amplify/predict, singularity)
1s
nf-test (mosdepth, conda)
1s
nf-test (mosdepth, docker)
1s
nf-test (mosdepth, singularity)
1s
nf-test (meryl/histogram, conda)
1s
nf-test (meryl/histogram, docker)
1s
nf-test (meryl/histogram, singularity)
1s
nf-test (meryl/count, conda)
1s
nf-test (meryl/count, docker)
1s
nf-test (meryl/count, singularity)
1s
nf-test (meryl/unionsum, conda)
1s
nf-test (meryl/unionsum, docker)
1s
nf-test (meryl/unionsum, singularity)
1s
nf-test (summarizedexperiment/summarizedexperiment, conda)
1s
nf-test (summarizedexperiment/summarizedexperiment, docker)
1s
nf-test (summarizedexperiment/summarizedexperiment, singularity)
1s
nf-test (vcftools, conda)
1s
nf-test (vcftools, docker)
1s
nf-test (vcftools, singularity)
1s
nf-test (hmmer/hmmsearch, conda)
1s
nf-test (hmmer/hmmsearch, docker)
1s
nf-test (hmmer/hmmsearch, singularity)
1s
nf-test (atlasgeneannotationmanipulation/gtf2featureannotation, conda)
1s
nf-test (atlasgeneannotationmanipulation/gtf2featureannotation, docker)
1s
nf-test (atlasgeneannotationmanipulation/gtf2featureannotation, singularity)
1s
nf-test (bcftools/filter, conda)
1s
nf-test (bcftools/filter, docker)
1s
nf-test (bcftools/filter, singularity)
1s
nf-test (genomescope2, conda)
1s
nf-test (genomescope2, docker)
1s
nf-test (genomescope2, singularity)
1s
nf-test (quartonotebook, docker)
1s
nf-test (quartonotebook, singularity)
1s
nf-test (gatk4/mutect2, conda)
1s
nf-test (gatk4/mutect2, docker)
1s
nf-test (gatk4/mutect2, singularity)
1s
nf-test (merfin/hist, conda)
1s
nf-test (merfin/hist, docker)
1s
nf-test (merfin/hist, singularity)
1s
nf-test (controlfreec/assesssignificance, conda)
1s
nf-test (controlfreec/assesssignificance, docker)
1s
nf-test (controlfreec/assesssignificance, singularity)
1s
nf-test (controlfreec/freec, conda)
1s
nf-test (controlfreec/freec, docker)
1s
nf-test (controlfreec/freec, singularity)
1s
nf-test (controlfreec/makegraph2, conda)
1s
nf-test (controlfreec/makegraph2, docker)
1s
nf-test (controlfreec/makegraph2, singularity)
1s
nf-test (controlfreec/freec2circos, conda)
1s
nf-test (controlfreec/freec2circos, docker)
1s
nf-test (controlfreec/freec2circos, singularity)
1s
nf-test (controlfreec/makegraph, conda)
1s
nf-test (controlfreec/makegraph, docker)
1s
nf-test (controlfreec/makegraph, singularity)
1s
nf-test (controlfreec/freec2bed, conda)
1s
nf-test (controlfreec/freec2bed, docker)
1s
nf-test (controlfreec/freec2bed, singularity)
1s
nf-test (htsnimtools/vcfcheck, conda)
1s
nf-test (htsnimtools/vcfcheck, docker)
1s
nf-test (htsnimtools/vcfcheck, singularity)
1s
nf-test (taxonkit/name2taxid, conda)
1s
nf-test (taxonkit/name2taxid, docker)
1s
nf-test (taxonkit/name2taxid, singularity)
1s
nf-test (agat/convertspgxf2gxf, conda)
1s
nf-test (agat/convertspgxf2gxf, docker)
1s
nf-test (agat/convertspgxf2gxf, singularity)
1s
nf-test (agat/convertspgff2tsv, conda)
1s
nf-test (agat/convertspgff2tsv, docker)
1s
nf-test (agat/convertspgff2tsv, singularity)
1s
nf-test (humid, conda)
1s
nf-test (humid, docker)
1s
nf-test (humid, singularity)
1s
nf-test (cellranger/vdj, docker)
1s
nf-test (cellranger/vdj, singularity)
1s
nf-test (cellranger/mkref, docker)
1s
nf-test (cellranger/mkref, singularity)
1s
nf-test (cellranger/count, docker)
1s
nf-test (cellranger/count, singularity)
1s
nf-test (cellranger/mkvdjref, docker)
1s
nf-test (cellranger/mkvdjref, singularity)
1s
nf-test (cellranger/mkgtf, docker)
1s
nf-test (cellranger/mkgtf, singularity)
1s
nf-test (cellranger/multi, docker)
1s
nf-test (cellranger/multi, singularity)
1s
nf-test (anota2seq/anota2seqrun, conda)
1s
nf-test (anota2seq/anota2seqrun, docker)
1s
nf-test (anota2seq/anota2seqrun, singularity)
1s
nf-test (bracken/combinebrackenoutputs, conda)
1s
nf-test (bracken/combinebrackenoutputs, docker)
1s
nf-test (bracken/combinebrackenoutputs, singularity)
1s
nf-test (bracken/bracken, conda)
1s
nf-test (bracken/bracken, docker)
1s
nf-test (bracken/bracken, singularity)
1s
nf-test (xengsort/index, conda)
1s
nf-test (xengsort/index, docker)
1s
nf-test (xengsort/index, singularity)
1s
nf-test (wfmash, conda)
1s
nf-test (wfmash, docker)
1s
nf-test (wfmash, singularity)
1s
nf-test (dragmap/hashtable, conda)
1s
nf-test (dragmap/hashtable, docker)
1s
nf-test (dragmap/hashtable, singularity)
1s
nf-test (velocyto, conda)
1s
nf-test (velocyto, docker)
1s
nf-test (velocyto, singularity)
1s
nf-test (plink/gwas, conda)
1s
nf-test (plink/gwas, docker)
1s
nf-test (plink/gwas, singularity)
1s
nf-test (plink/ld, conda)
1s
nf-test (plink/ld, docker)
1s
nf-test (plink/ld, singularity)
1s
nf-test (plink/epistasis, conda)
1s
nf-test (plink/epistasis, docker)
1s
nf-test (plink/epistasis, singularity)
1s
nf-test (plink/fastepistasis, conda)
1s
nf-test (plink/fastepistasis, docker)
1s
nf-test (plink/fastepistasis, singularity)
1s
nf-test (iqtree, conda)
1s
nf-test (iqtree, docker)
1s
nf-test (iqtree, singularity)
1s
nf-test (ensemblvep/download, conda)
1s
nf-test (ensemblvep/download, docker)
1s
nf-test (ensemblvep/download, singularity)
1s
nf-test (ensemblvep/vep, docker)
1s
nf-test (ensemblvep/vep, singularity)
1s
nf-test (samtools/faidx, conda)
1s
nf-test (samtools/faidx, docker)
1s
nf-test (samtools/faidx, singularity)
1s
nf-test (bedops/convert2bed, conda)
1s
nf-test (bedops/convert2bed, docker)
1s
nf-test (bedops/convert2bed, singularity)
1s
nf-test (propr/propd, conda)
1s
nf-test (propr/propd, docker)
1s
nf-test (propr/propd, singularity)
1s
nf-test (propr/propr, conda)
1s
nf-test (propr/propr, docker)
1s
nf-test (propr/propr, singularity)
1s
nf-test (minimap2/align, conda)
1s
nf-test (minimap2/align, docker)
1s
nf-test (minimap2/align, singularity)
1s
nf-test (minimap2/index, conda)
1s
nf-test (minimap2/index, docker)
1s
nf-test (minimap2/index, singularity)
1s
nf-test (spaceranger/mkref, docker)
1s
nf-test (spaceranger/mkref, singularity)
1s
nf-test (spaceranger/count, docker)
1s
nf-test (spaceranger/count, singularity)
1s
nf-test (spaceranger/mkgtf, docker)
1s
nf-test (spaceranger/mkgtf, singularity)
1s
nf-test (rgi/main, conda)
1s
nf-test (rgi/main, docker)
1s
nf-test (rgi/main, singularity)
1s
nf-test (rgi/cardannotation, conda)
1s
nf-test (rgi/cardannotation, docker)
1s
nf-test (rgi/cardannotation, singularity)
1s
nf-test (cobrameta, conda)
1s
nf-test (cobrameta, docker)
1s
nf-test (cobrameta, singularity)
1s
nf-test (gtdbtk/classifywf, conda)
1s
nf-test (gtdbtk/classifywf, docker)
1s
nf-test (gtdbtk/classifywf, singularity)
1s
nf-test (eggnogmapper, conda)
1s
nf-test (eggnogmapper, docker)
1s
nf-test (eggnogmapper, singularity)
1s
nf-test (gawk, conda)
1s
nf-test (gawk, docker)
1s
nf-test (gawk, singularity)
1s
nf-test (bamcmp, conda)
1s
nf-test (bamcmp, docker)
1s
nf-test (bamcmp, singularity)
1s
nf-test (sratools/prefetch, conda)
1s
nf-test (sratools/prefetch, docker)
1s
nf-test (sratools/prefetch, singularity)
1s
nf-test (kraken2/add, conda)
1s
nf-test (kraken2/add, docker)
1s
nf-test (kraken2/add, singularity)
1s
nf-test (kraken2/build, conda)
1s
nf-test (kraken2/build, docker)
1s
nf-test (kraken2/build, singularity)
1s
nf-test (kraken2/kraken2, conda)
1s
nf-test (kraken2/kraken2, docker)
1s
nf-test (kraken2/kraken2, singularity)
1s
nf-test (subworkflows/bam_create_som_pon_gatk, conda)
1s
nf-test (subworkflows/bam_create_som_pon_gatk, docker)
1s
nf-test (subworkflows/bam_create_som_pon_gatk, singularity)
1s
nf-test (subworkflows/quantify_pseudo_alignment, conda)
1s
nf-test (subworkflows/quantify_pseudo_alignment, docker)
1s
nf-test (subworkflows/quantify_pseudo_alignment, singularity)
1s
nf-test (subworkflows/bam_dedup_stats_samtools_umicollapse, conda)
1s
nf-test (subworkflows/bam_dedup_stats_samtools_umicollapse, docker)
1s
nf-test (subworkflows/bam_dedup_stats_samtools_umicollapse, singularity)
1s
nf-test (subworkflows/fasta_build_add_kraken2, conda)
1s
nf-test (subworkflows/fasta_build_add_kraken2, docker)
1s
nf-test (subworkflows/fasta_build_add_kraken2, singularity)
1s
nf-test (subworkflows/fastq_align_bowtie2, conda)
1s
nf-test (subworkflows/fastq_align_bowtie2, docker)
1s
nf-test (subworkflows/fastq_align_bowtie2, singularity)
1s
nf-test (subworkflows/fastq_align_bamcmp_bwa, conda)
1s
nf-test (subworkflows/fastq_align_bamcmp_bwa, docker)
1s
nf-test (subworkflows/fastq_align_bamcmp_bwa, singularity)
1s
nf-test (subworkflows/fastq_taxonomic_profile_metaphlan, conda)
1s
nf-test (subworkflows/fastq_taxonomic_profile_metaphlan, docker)
1s
nf-test (subworkflows/fastq_taxonomic_profile_metaphlan, singularity)
1s
nf-test (subworkflows/fastq_download_prefetch_fasterqdump_sratools, conda)
1s
nf-test (subworkflows/fastq_download_prefetch_fasterqdump_sratools, docker)
1s
nf-test (subworkflows/fastq_download_prefetch_fasterqdump_sratools, singularity)
1s
confirm-pass
1s
8m 4s