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run nf-core lint on trimgalore (#5129) #9

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run nf-core lint on trimgalore (#5129)

run nf-core lint on trimgalore (#5129) #9

Triggered via push March 18, 2024 09:03
@LouisLeNezetLouisLeNezet
pushed a984184
master
Status Cancelled
Total duration 3d 6h 37m 59s
Artifacts –

test.yml

on: push
nf-test-changes
4s
nf-test-changes
pytest-changes
5s
pytest-changes
prettier
42s
prettier
editorconfig
10s
editorconfig
pre-commit
11s
pre-commit
Matrix: nf-test
Matrix: nf-core-lint
Matrix: pytest
confirm-pass
0s
confirm-pass
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Annotations

44 errors and 3 warnings
pytest (gatk/unifiedgenotyper, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
pytest (gatk/unifiedgenotyper, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
pytest (gatk/unifiedgenotyper, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-core-lint (bwa/mem)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-core-lint (ribotish/quality)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-core-lint (glimpse2/phase)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-core-lint (happy/prepy)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-core-lint (ribotish/predict)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-core-lint (ribotricer/detectorfs)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-core-lint (gatk/unifiedgenotyper)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-core-lint (subworkflows/fastq_align_dna)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-core-lint (umicollapse)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-core-lint (trimgalore)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (glimpse2/phase, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-core-lint (subworkflows/fastq_align_bwa)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (happy/prepy, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (bwa/mem, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (glimpse2/phase, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (glimpse2/phase, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (happy/prepy, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (ribotish/predict, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (ribotish/predict, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (happy/prepy, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (ribotish/predict, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (ribotish/quality, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (ribotricer/detectorfs, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (ribotricer/detectorfs, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (ribotricer/detectorfs, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (ribotish/quality, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (trimgalore, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (bwa/mem, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (ribotish/quality, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (bwa/mem, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (subworkflows/fastq_align_bwa, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (subworkflows/fastq_align_dna, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (subworkflows/fastq_align_bwa, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (trimgalore, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (umicollapse, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (subworkflows/fastq_align_dna, singularity)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (trimgalore, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (subworkflows/fastq_align_dna, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (umicollapse, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (umicollapse, docker)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
nf-test (subworkflows/fastq_align_bwa, conda)
Canceling since a higher priority waiting request for 'Run tests-refs/heads/master' exists
pytest-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.