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Fix variable typo in amrfinderplus/run (#3892) #2

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Fix variable typo in amrfinderplus/run (#3892)

Fix variable typo in amrfinderplus/run (#3892) #2

Triggered via push September 28, 2023 14:30
@LouisLeNezetLouisLeNezet
pushed 016547e
master
Status Success
Total duration 12m 51s
Artifacts –

test.yml

on: push
pytest-changes
9s
pytest-changes
nf-test-changes
5s
nf-test-changes
prettier
40s
prettier
editorconfig
16s
editorconfig
Matrix: nf-core-lint
Matrix: pytest
Matrix: nf-test
confirm-pass
1s
confirm-pass
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Annotations

22 warnings
pytest (blast/blastp, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (blast/blastn, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (blast/tblastn, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (blast/makeblastdb, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (amrfinderplus/run, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (krakenuniq/build, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (krakenuniq/download, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (krakenuniq/preloadedkrakenuniq, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (manta/somatic, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (controlfreec/assesssignificance, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (custom/matrixfilter, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (manta/germline, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (samtools/reheader, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (controlfreec/freec2circos, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (controlfreec/freec, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (controlfreec/freec2bed, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (seqkit/sliding, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (nonpareil, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (manta/tumoronly, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (controlfreec/makegraph, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (tcoffee/align, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
pytest (quilt/quilt, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/