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@LoLab-MSM

Lopez Lab

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  1. pysb pysb Public

    Forked from pysb/pysb

    Python framework for Systems Biology modeling [Lopez Lab Mods]

    Python 6 8

  2. PyDREAM PyDREAM Public

    MT-DREAM(ZS) algorithm for model optimization, calibration, selection

    Python 51 33

  3. PyBILT PyBILT Public

    Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.

    Python 24 9

  4. simplePSO simplePSO Public

    Particle Swarm Optimization algorithm in Python

    Python 13 4

  5. MAGINE MAGINE Public

    Mechanism of Action Generation involving Network Analysis

    Jupyter Notebook 9 5

  6. pyvipr pyvipr Public

    Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML

    Jupyter Notebook 27 4

Repositories

Showing 10 of 67 repositories
  • pydyno Public

    Tool that uses tropical algebra concepts to 'decompose' species trajectories in the protein-protein interactions that drive changes of concentration in time

    LoLab-MSM/pydyno’s past year of commit activity
    Jupyter Notebook 8 BSD-2-Clause 1 6 5 Updated Sep 26, 2024
  • PyDREAM Public

    MT-DREAM(ZS) algorithm for model optimization, calibration, selection

    LoLab-MSM/PyDREAM’s past year of commit activity
    Python 51 GPL-3.0 33 11 3 Updated Jul 24, 2024
  • Bayes-MMI Public
    LoLab-MSM/Bayes-MMI’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 5, 2024
  • simplePSO Public

    Particle Swarm Optimization algorithm in Python

    LoLab-MSM/simplePSO’s past year of commit activity
    Python 13 4 1 0 Updated Apr 23, 2024
  • pydream_it Public

    Read PySB models and generate a script for PyDREAM calibration

    LoLab-MSM/pydream_it’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Mar 25, 2024
  • pysb Public Forked from pysb/pysb

    Python framework for Systems Biology modeling [Lopez Lab Mods]

    LoLab-MSM/pysb’s past year of commit activity
    Python 6 BSD-2-Clause 72 11 0 Updated Mar 8, 2024
  • Opt2Q Public
    LoLab-MSM/Opt2Q’s past year of commit activity
    Python 1 0 0 0 Updated Feb 9, 2024
  • SCLC-TF-Network-Analysis Public

    This repository provides source MATLAB codes for the structural analysis of Small Cell Lung Cancer Transcription Factor network using Dense Spanning Trees (DST) and Minimum Dense Spanning Trees (MDST)

    LoLab-MSM/SCLC-TF-Network-Analysis’s past year of commit activity
    MATLAB 1 MIT 0 0 0 Updated Oct 31, 2023
  • pyvipr Public

    Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML

    LoLab-MSM/pyvipr’s past year of commit activity
    Jupyter Notebook 27 MIT 4 6 17 Updated Mar 13, 2023
  • GPU_SSA_paper2023 Public
    LoLab-MSM/GPU_SSA_paper2023’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 1, 2023
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