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  1. Gene-model-discordance-between-GFF-file-and-RNA-seq-data Gene-model-discordance-between-GFF-file-and-RNA-seq-data Public

    This repository converts single stranded RNA-seq data into a BigWig file which can be opened in FungiDB when investigating fungi genomes (or the organism specific EuPathDB site) where coverage plot…

    1

  2. ukbb_decode_proteins ukbb_decode_proteins Public

    1

  3. rev_mr_paper rev_mr_paper Public

    This is the code used in the pre-print "Reverse Mendelian randomization separates causes from early proteomic biomarkers of glioma", please see this link for further details on the research: https:…

    R 1

  4. Forest-Plot-Systematic-Review Forest-Plot-Systematic-Review Public

    This code runs a random effects model and a Freeman-Tukey Double arcsine transformation on R. This prepares the data with the chosen statistical analyses before running a forest plot.

    R

  5. Forest-plot-Mendelian-Randomization Forest-plot-Mendelian-Randomization Public

    This code produces a forest plot of each individual SNP effect to the overall effect of each protein (in this example) in a Mendelian randomization analysis.

    R

  6. reverse_mr_simulation reverse_mr_simulation Public

    R