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Laurence Kuhlburger committed Mar 8, 2024
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2 changes: 1 addition & 1 deletion CHANGELOG.md
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Expand Up @@ -11,7 +11,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- Added a csv input option for crisprcleanr ([#105](https://github.com/nf-core/crisprseq/pull/105))
- Added a contrasts parameter so the pipeline automatically creates design matrices and MAGeCK MLE ([#109](https://github.com/nf-core/crisprseq/pull/109))
- Added bowtie2 and three prime and five prime adapter trimming ([#103](https://github.com/nf-core/crisprseq/pull/103) and [#123](https://github.com/nf-core/crisprseq/pull/123)
)
)

### Fixed

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90 changes: 23 additions & 67 deletions modules.json
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Expand Up @@ -8,164 +8,120 @@
"bowtie2/align": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": [
"modules"
]
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}
}
},
Expand All @@ -174,4 +130,4 @@
}
}
}
}
}
2 changes: 1 addition & 1 deletion workflows/crisprseq_screening.nf
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Expand Up @@ -146,7 +146,7 @@ workflow CRISPRSEQ_SCREENING {
ch_cutadapt
)
CUTADAPT_FIVE_PRIME.out.reads.combine(Channel.value([[]])).set { ch_cutadapt }
ch_cutadapt.map{ meta, fastq, proto ->
ch_cutadapt.map{ meta, fastq, proto ->
meta.id = "${meta.id}_trim"
[meta, fastq, proto]
}.set { ch_cutadapt }
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