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Gff3 issue#3

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LarsGab wants to merge 58 commits intoLarsGab:mainLarsGab/TSEBRA:mainfrom Gaius-Augustus:gff3_issueGaius-Augustus/TSEBRA:gff3_issueCopy head branch name to clipboard

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Commits

Commits on May 7, 2021

• Update README.md

  LarsGab

  authored
  9214986

Commits on May 20, 2021

• Update README.md

  LarsGab

  authored
  708968c

Commits on May 21, 2021

• Create LICENSE.TXT

  LarsGab

  authored
  db602b4

• Rename LICENSE.TXT to LICENSE.txt

  LarsGab

  authored
  6a8b7f7

• Update README.md

  LarsGab

  authored
  4af4633

• Update README.md

  LarsGab

  authored
  ef59c55

Commits on Jun 4, 2021

• Update README.md

  LarsGab

  authored
  14a8fad

Commits on Jun 8, 2021

• Update README.md

  LarsGab

  authored
  46080da

Commits on Jun 9, 2021

• Update README.md

  LarsGab

  authored
  984d96d

Commits on Jun 28, 2021

• add 2nd config file

  LarsGab

  committed
  4a47baf

• Merge branch 'main' of https://github.com/Gaius-Augustus/TSEBRA into main

  LarsGab

  committed
  7cbcfda

Commits on Jul 5, 2021

• Changed lineterminator of output from "\r\n" to "\n"

  LarsGab

  committed
  6c8866a

Commits on Jul 6, 2021

• added "gene" line to output

  LarsGab

  committed
  f126c49

Commits on Jul 16, 2021

• Added script rename_gtf.py to rename TSEBRA outputs.

  

  Lars Gabriel

  committed
  bbc810c

• Update README.md

  LarsGab

  authored
  1f167ad

Commits on Jul 19, 2021

• fixed prefix of rename_gtf

  

  Lars Gabriel

  committed
  304a158

Commits on Aug 5, 2021

• fixed adding start/stop codons in genome_anno

  LarsGab

  committed
  61b988a

Commits on Aug 23, 2021

• added config file

  LarsGab

  committed
  879d5c5

• Create keep_ab_initio.cfg

  LarsGab

  authored
  390618e

Commits on Aug 24, 2021

• Merge branch 'main' of https://github.com/Gaius-Augustus/TSEBRA into main

  LarsGab

  committed
  ee91774

Commits on Oct 7, 2021

• reworked documentation about config file

  LarsGab

  committed
  4f8e825

• Update README.md

  LarsGab

  authored
  84270af

Commits on Oct 13, 2021

• fixed typo in example documentation

  LarsGab

  committed
  d263a20

• Merge branch 'main' of https://github.com/Gaius-Augustus/TSEBRA into main

  LarsGab

  committed
  95329dd

Commits on Nov 1, 2021

• fixed UTR format error

  LarsGab

  committed
  48251b1

• fixed UTR format error also in rename_gtf

  LarsGab

  committed
  f350feb

Commits on Nov 8, 2021

• fixed empty spaces in gtf files

  LarsGab

  committed
  64fe05e

Commits on Nov 26, 2021

• Update README.md

  LarsGab

  authored
  336c380

Commits on Jan 27, 2022

• Update README.md

  LarsGab

  authored
  556df12

Commits on Feb 3, 2022

• Update README.md

  LarsGab

  authored
  3780b7d

• Update README.md

  LarsGab

  authored
  957476d

Commits on Apr 11, 2022

• fixed bug finding correct gene clusters of overlapping transcripts

  LarsGab

  committed
  4c8a72d

• removed print

  LarsGab

  committed
  d992b1d

Commits on May 2, 2022

• added keep_gtf option

  

  Lars Gabriel

  committed
  54e6844

• removed tsebra to require hintfiles

  

  Lars Gabriel

  committed
  b405f14

Commits on Jun 1, 2022

• fixed geneID bug

  LarsGab

  committed
  ec629e0

Commits on Aug 13, 2022

• Update tsebra.py

  LarsGab

  authored
  df2fc93

Commits on Aug 14, 2022

• Create .gitkeep

  LarsGab

  authored
  847e7ab

• Add files via upload

  LarsGab

  authored
  eca3f7c

• Add files via upload

  LarsGab

  authored
  8c6e934

• Update README.md

  LarsGab

  authored
  7a25c88

• Add files via upload

  LarsGab

  authored
  cf86504

Commits on Oct 26, 2022

• braker3 update

  

  Lars Gabriel

  committed
  238fa57

• add Logo

  

  Lars Gabriel

  committed
  1432ff8

Commits on Nov 18, 2022

• add script for getting longest isoform of all gene loci

  

  Lars Gabriel

  committed
  0347452

• Update README.md

  LarsGab

  authored
  64ecab0

Commits on Nov 22, 2022

• fixed get_longest_isoform.py

  

  Lars Gabriel

  committed
  0e6c9bf

Commits on Dec 1, 2022

• Update README.md

  LarsGab

  authored
  2571d01

Commits on Dec 14, 2022

• Update default.cfg

  LarsGab

  authored
  3abd25d

Commits on Jan 11, 2023

• changed default parameter

  

  Lars Gabriel

  committed
  4d0804a

• Merge branch 'main' into braker3

  LarsGab

  authored
  1365796

• Merge pull request #27 from Gaius-Augustus/braker3

  Show description for ca57ce6
  LarsGab

  authored
  ca57ce6

Commits on Jan 31, 2023

• changed default parameters, added options --score_tab, --filter_single_exon_genes

  

  Lars Gabriel

  committed
  7067946

Commits on Feb 20, 2023

• added option to ignore tx phase while detecting overlapping transcripts

  

  Lars Gabriel

  committed
  10e804d

Commits on Mar 1, 2023

• update for braker3

  

  Lars Gabriel

  committed
  2e8ace5

• Update README.md

  LarsGab

  authored
  bdcbb0a

Commits on Mar 3, 2023

• Update README.md

  LarsGab

  authored
  b0d6c4f

Commits on Apr 25, 2023

• help with gff issue

  

  Lars Gabriel

  committed
  7f4b7fb