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updated: spades from 3.15.3 to 3.15.5 (fix ablab/spades#873)
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@fabiosanchez
fabiosanchez committed Jul 8, 2024
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1 change: 1 addition & 0 deletions .gitignore
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/target/
/dependency-reduced-pom.xml
/magset-1.3.0.simg
tests/
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6 changes: 3 additions & 3 deletions how-to-build.txt
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#To build the code and generate new docker image:
./build.sh fsanchez/magset:1.5.0
./build.sh fsanchez/magset:1.5.1

#to update the remote image:
#docker push fsanchez/magset:1.5.0
#docker push fsanchez/magset:1.5.1

(beta)
#To generate the singularity image, please execute:
singularity pull docker://fsanchez/magset:1.5.0
singularity pull docker://fsanchez/magset:1.5.1

22 changes: 11 additions & 11 deletions others/docker/environment-base.lock
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Expand Up @@ -47,12 +47,12 @@ https://conda.anaconda.org/conda-forge/linux-64/tbb-2021.5.0-h924138e_1.tar.bz2#
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Expand Down Expand Up @@ -119,10 +119,10 @@ https://conda.anaconda.org/bioconda/noarch/perl-devel-stacktrace-2.04-pl5321hdfd
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Expand Down Expand Up @@ -152,8 +152,8 @@ https://conda.anaconda.org/conda-forge/linux-64/python-3.10.6-ha86cf86_0_cpython
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Expand All @@ -164,10 +164,10 @@ https://conda.anaconda.org/bioconda/linux-64/perl-net-ssleay-1.74-0.tar.bz2#5a81
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Expand All @@ -183,20 +183,20 @@ https://conda.anaconda.org/conda-forge/linux-64/brotli-1.0.9-h166bdaf_7.tar.bz2#
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Expand All @@ -206,11 +206,11 @@ https://conda.anaconda.org/bioconda/linux-64/fastani-1.33-h0fdf51a_1.tar.bz2#490
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Expand All @@ -223,7 +223,7 @@ https://conda.anaconda.org/conda-forge/noarch/pytz-2022.2.1-pyhd8ed1ab_0.tar.bz2
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Expand Down Expand Up @@ -254,8 +254,8 @@ https://conda.anaconda.org/conda-forge/linux-64/cffi-1.15.1-py310h255011f_0.tar.
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2 changes: 1 addition & 1 deletion run-magset.sh
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@@ -1,7 +1,7 @@
#!/bin/bash
set -e

version=1.5.0
version=1.5.1

function prop {
grep "^${1}" ${file}|cut -d'=' -f2
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4 changes: 2 additions & 2 deletions wiki/How-to-install.md
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Expand Up @@ -13,9 +13,9 @@
<h1>Installing </h1>

* Download the main script <br/>
`curl -OL https://github.com/LaboratorioBioinformatica/magset/releases/download/1.5.0/run-magset.sh`
`curl -OL https://github.com/LaboratorioBioinformatica/magset/releases/download/1.5.1/run-magset.sh`
<br/> or <br/>
`wget https://github.com/LaboratorioBioinformatica/magset/releases/download/1.5.0/run-magset.sh`
`wget https://github.com/LaboratorioBioinformatica/magset/releases/download/1.5.1/run-magset.sh`
* Make the script executable <br/>
`chmod +x run-magset.sh`

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