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Trim very long peptide group names during import #923

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merged 1 commit into from
Jul 3, 2024
Merged

Trim very long peptide group names during import #923

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11 changes: 7 additions & 4 deletions src/org/labkey/targetedms/parser/PeptideGroup.java
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Original file line number Diff line number Diff line change
Expand Up @@ -15,6 +15,7 @@

package org.labkey.targetedms.parser;

import org.apache.commons.lang3.StringUtils;
import org.labkey.api.targetedms.RepresentativeDataState;
import org.labkey.targetedms.query.PeptideGroupManager;

Expand All @@ -30,6 +31,8 @@
*/
public class PeptideGroup extends AnnotatedEntity<PeptideGroupAnnotation>
{
private static final int MAX_LENGTH = 1050;

private long _runId;

private String _label;
Expand Down Expand Up @@ -64,7 +67,7 @@ public String getLabel()

public void setLabel(String label)
{
_label = label;
_label = StringUtils.truncate(label, MAX_LENGTH);
}

public String getName()
Expand All @@ -74,7 +77,7 @@ public String getName()

public void setName(String name)
{
_name = name;
_name = StringUtils.truncate(name, MAX_LENGTH);
}

public String getDescription()
Expand All @@ -84,7 +87,7 @@ public String getDescription()

public void setDescription(String description)
{
_description = description;
_description = StringUtils.truncate(description, MAX_LENGTH);
}

public boolean isDecoy()
Expand Down Expand Up @@ -153,7 +156,7 @@ public String getAltDescription()

public void setAltDescription(String altDescription)
{
_altDescription = altDescription;
_altDescription = StringUtils.truncate(altDescription, MAX_LENGTH);
}

public Protein addSingleProtein()
Expand Down