Merge develop to develop

LabKey · Jul 16, 2024 · a9ea0c3 · a9ea0c3
2 parents 7fb981e + cc126b4
commit a9ea0c3
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/SequenceAnalysis/pipeline_code/sequence_tools_install.sh b/SequenceAnalysis/pipeline_code/sequence_tools_install.sh
@@ -842,9 +842,9 @@ then
       install ./cutadapt-1.8.1/bin/_preamble.py ${LKTOOLS_DIR}/_preamble.py
       cp -R ./cutadapt-1.8.1/cutadapt ${LKTOOLS_DIR}/cutadapt
     else
-      $PIP_EXE install --user cutadapt==4.2
+      $PIP_EXE install --user --break-system-packages cutadapt==4.2
       $PIP_EXE show cutadapt
-      $PIP_EXE install --user pyinstaller
+      $PIP_EXE install --user --break-system-packages pyinstaller
       $PIP_EXE show pyinstaller
       ~/.local/bin/pyinstaller --onefile --clean ~/.local/bin/cutadapt
       cp ./dist/cutadapt ${LKTOOLS_DIR}/cutadapt