Merge pull request #149 from LSSTDESC/v3.1.0 #512
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| name: build_and_test | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - lsst-dev | |
| - master | |
| pull_request: | |
| jobs: | |
| build_and_test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: "3.11" | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| show-channel-urls: true | |
| activate-environment: test | |
| - name: Install dependencies | |
| # Might be quicker to install rubin-env plus any necessary additions. | |
| shell: bash -l {0} | |
| run: | | |
| mamba install -y "numpy>1.15" scipy "matplotlib>3.1" pandas llvmlite numba "astropy>=3.2" "photutils>=1.7" astroquery coloredlogs scikit-image>=0.20 h5py emcee tqdm mpi4py schwimmbad "iminuit>=2" "coverage>=3.6" configparser coveralls deprecated pyyaml "pytest==8.0.0" pytest-cov rubin-libradtran "getCalspec>=2.0.0" | |
| # python -c "from getCalspec.rebuild import rebuild_tables; rebuild_tables()" | |
| pip install lsst.utils | |
| pip install git+https://github.com/LSSTDESC/getObsAtmo.git@main | |
| mamba install astrometry | |
| - name: Download test data | |
| shell: bash -l {0} | |
| run: | | |
| wget -r -q -nc http://data.astrometry.net/5000/index-5002-24.fits | |
| wget -r -q -nc http://data.astrometry.net/5000/index-5000-40.fits | |
| mv data.astrometry.net/5000/index-*.fits $CONDA_PREFIX/data/ | |
| export ASTROMETRYNET_DIR=$CONDA_PREFIX | |
| - name: List installed packages | |
| shell: bash -l {0} | |
| run: | | |
| conda list | |
| pip list -v | |
| - name: Build and install | |
| shell: bash -l {0} | |
| run: | | |
| pip install -v --no-deps -e . | |
| - name: Run full chain test | |
| shell: bash -l {0} | |
| run: | | |
| pytest tests/test_fullchain.py --log-cli-level=INFO --cov --cov-report lcov | |
| - name: Run pytests | |
| shell: bash -l {0} | |
| run: | | |
| pytest tests/test_extractor.py --log-cli-level=INFO --cov --cov-append --cov-report lcov | |
| pytest tests/test_simulator.py --log-cli-level=INFO --cov --cov-append --cov-report lcov | |
| pytest tests/test_utils.py --log-cli-level=INFO --cov --cov-append --cov-report lcov | |
| pytest tests/test_fitter.py --log-cli-level=INFO --cov --cov-append --cov-report lcov | |
| pytest tests/test_multispectra.py --log-cli-level=INFO --cov --cov-append --cov-report lcov | |
| - name: Run doctests and coverage | |
| shell: bash -l {0} | |
| run: pytest spectractor tests/test_fullchain.py -v --cov --cov-append --cov-report lcov --doctest-modules spectractor --doctest-continue-on-failure | |
| continue-on-error: true | |
| - name: Coveralls | |
| uses: coverallsapp/github-action@master | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| path-to-lcov: coverage.lcov |