inspect path #211
Workflow file for this run
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| name: continuous-integration | ||
| on: | ||
| push: | ||
| branches: | ||
| - main | ||
| - master | ||
| - releases/* | ||
| pull_request: null | ||
| env: | ||
| CACHE_NUMBER: 0 # increase to reset cache manually | ||
| CONDA_ENV: .github/environment.yml | ||
| jobs: | ||
| build: | ||
| runs-on: ${{ matrix.os }} | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| os: [macos-latest, ubuntu-latest] | ||
| include: | ||
| - os: macos-latest | ||
| label: osx-64 | ||
| prefix: /Users/runner/miniconda3 | ||
| - os: ubuntu-latest | ||
| label: linux-64 | ||
| prefix: /usr/share/miniconda3 | ||
| steps: | ||
| # - name: Cancel previous runs | ||
| # uses: styfle/[email protected] | ||
| # with: | ||
| # access_token: ${{ github.token }} | ||
| - name: Checkout NaMaster repository | ||
| uses: actions/checkout@v4 | ||
| - name: Set up conda | ||
| uses: conda-incubator/setup-miniconda@v3 | ||
| with: | ||
| channels: conda-forge, defaults | ||
| channel-priority: strict | ||
| show-channel-urls: true | ||
| miniforge-version: latest | ||
| miniforge-variant: Mambaforge | ||
| # - name: "macOS: set env variables" | ||
| # if: matrix.label == 'osx-64' | ||
| # run: | | ||
| # #mamba install llvm-openmp | ||
| # echo "DYLD_FALLBACK_LIBRARY_PATH=${CONDA_PREFIX}/lib" >> $GITHUB_ENV | ||
| # SDKROOT=$(xcrun --sdk macosx --show-sdk-path) | ||
| # echo "SDKROOT: ${SDKROOT}" | ||
| # echo "SDKROOT=${SDKROOT}" >> $GITHUB_ENV | ||
| # echo "CONDA_BUILD_SYSROOT=${SDKROOT}" >> $GITHUB_ENV | ||
| # | ||
| # export CFLAGS="-I/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include" | ||
| # export LDFLAGS="-L/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/lib" | ||
| - name: Set current date as environment variable | ||
| run: echo "TODAY=$(date +'%Y.%m.%d')" >> $GITHUB_ENV | ||
| - name: Get cached environment | ||
| uses: actions/cache@v3 | ||
| id: cache | ||
| with: | ||
| path: ${{ matrix.prefix }} | ||
| key: | ||
| conda-py${{ matrix.py }}--${{ | ||
| matrix.os }}--${{ | ||
| hashFiles(env.CONDA_ENV) }}-${{ | ||
| hashFiles('setup.py') }}--${{ | ||
| env.TODAY }}-${{ | ||
| env.CACHE_NUMBER }} | ||
| - name: Install environment packages | ||
| if: steps.cache.outputs.cache-hit != 'true' | ||
| run: | | ||
| export MAMBA_NO_BANNER=1 # hide mamba banner from output | ||
| mamba env update --file ${{ env.CONDA_ENV }} --prune | ||
| - name: Show installed | ||
| run: conda list | ||
| - name: conda libraries in path | ||
| run: | | ||
| ls ${CONDA_PREFIX}/lib | ||
| ls ${CONDA_PREFIX}/include | ||
| export CPPFLAGS+=" -I${CONDA_PREFIX}/include" | ||
| export LDFLAGS+=" -I${CONDA_PREFIX}/lib" | ||
| export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${CONDA_PREFIX}/lib | ||
| - name: Install fitsio | ||
| run: | | ||
| sudo -H apt-get install libcfitsio-dev | ||
| - name: Flake | ||
| run: | | ||
| flake8 pymaster --exclude=nmtlib.py | ||
| flake8 test --exclude=benchmarks | ||
| - name: Build NaMaster | ||
| run: | | ||
| echo $CPPFLAGS | ||
| echo $LDFLAGS | ||
| echo $LD_LIBRARY_PATH | ||
| python setup.py install | ||
| - name: C tests | ||
| run: | | ||
| make check | ||
| - name: Python tests | ||
| run: | | ||
| pytest -vv pymaster --cov=pymaster | ||
| # - name: Clean install with threads | ||
| # run: | | ||
| # pip uninstall pymaster -y | ||
| # rm _deps/lib/libnmt.a | ||
| # python setup.py install --enable-fftw-pthreads --disable-openmp | ||
| # | ||
| # - name: C tests with threads | ||
| # run: | | ||
| # make check | ||
| # | ||
| # - name: Python tests with threads | ||
| # run: | | ||
| # pytest -vv pymaster | ||
| # | ||
| - name: coveralls | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| run: | | ||
| coveralls --service=github | ||
