Skip to content

Commit

Permalink
restructure
Browse files Browse the repository at this point in the history
  • Loading branch information
aw-watson committed Jan 7, 2025
1 parent be19942 commit ffb55d5
Show file tree
Hide file tree
Showing 174 changed files with 1 addition and 16 deletions.
17 changes: 1 addition & 16 deletions README.md
Original file line number Diff line number Diff line change
@@ -1,18 +1,3 @@
# EDGE_workflows

This is repo with reconstructed [EDGE bioinformatics](https://github.com/LANL-Bioinformatics/EDGE/tree/devel) modularized workflows by using [Nextflow](https://github.com/nextflow-io/nextflow). Here is the list for modules and could be expanded.

1. sra2fastq
2. runFaQCs
3. hostRemoval
4. runAssembly
5. runReadsToContig
6. readsTaxonomyAssignment
7. contigsTaxonomyAssignment
8. runAnnotation
9. phageFinder
10. runAntiSmash
11. runBinning
12. runCheckM
13. runSpecialtyGenesProfiling
14. ...
Repo for EDGEv3
Loading

0 comments on commit ffb55d5

Please sign in to comment.