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performance: gather of pre refinement vcf is slow #119

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Kurt-Hetrick opened this issue May 21, 2024 · 1 comment
Open

performance: gather of pre refinement vcf is slow #119

Kurt-Hetrick opened this issue May 21, 2024 · 1 comment

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@Kurt-Hetrick
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no idea why, doesn't really matter, but it is really annoying especially when testing changes to code.
@Kurt-Hetrick
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this is likely due to a bug on my part. i'm writing out a scatter from a combined file, but i'm not supplying intervals...i need to supply intervals and this is where i hate picard...b/c the scatter bed files has to be in the picard format...so this gets annoying.

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