worker thread class added

KubiV · Aug 31, 2024 · 9248a31 · 9248a31
1 parent 526d34e
commit 9248a31
Show file tree

Hide file tree

Showing 7 changed files with 251 additions and 226 deletions.
diff --git a/.DS_Store b/.DS_Store
diff --git a/version2/.DS_Store b/version2/.DS_Store
diff --git a/version2/src/.DS_Store b/version2/src/.DS_Store
diff --git a/version2/src/PDBfileParse.py b/version2/src/PDBfileParse.py
@@ -1,9 +1,10 @@
-from Bio import PDB
+#from Bio import PDB
+from Bio.PDB import PDBParser
 import numpy as np
 
 def extract_coordinates(pdb_filename):
     # Create a PDB parser
-    parser = PDB.PDBParser(QUIET=True)
+    parser = PDBParser(QUIET=True)
 
     # Load the structure from the PDB file
     structure = parser.get_structure('molecule', pdb_filename)
@@ -34,7 +35,7 @@ def extract_coordinates(pdb_filename):
     return atom_coordinates
 
 def extract_coordinates2(pdb_filename):
-    parser = PDB.PDBParser(QUIET=True)
+    parser = PDBParser(QUIET=True)
     structure = parser.get_structure('molecule', pdb_filename)
     atoms = structure.get_atoms()
     atom_coordinates = {}

diff --git a/version2/src/__pycache__/MoleculeModelGenerating.cpython-311.pyc b/version2/src/__pycache__/MoleculeModelGenerating.cpython-311.pyc
diff --git a/version2/src/__pycache__/PDBfileParse.cpython-311.pyc b/version2/src/__pycache__/PDBfileParse.cpython-311.pyc