[LinearSolvers] Add external lib for parallel Gauss-Seidel #23385
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| name: CI | |
| on: | |
| pull_request: | |
| branches: | |
| - master | |
| workflow_dispatch: | |
| # for cancelling redundant runs | |
| concurrency: | |
| group: ci-${{ github.head_ref }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read | |
| jobs: | |
| changed-files: | |
| runs-on: ubuntu-latest | |
| # see https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions#example-defining-outputs-for-a-job | |
| outputs: | |
| files: ${{ steps.get_files.outputs.changed_files }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - id: get_files | |
| run: | | |
| echo "changed_files=$(python3 .github/get_files_changed_in_pr.py)" >> $GITHUB_OUTPUT | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| GITHUB_PR_NUMBER: ${{ github.event.pull_request.number }} | |
| ubuntu: | |
| runs-on: ubuntu-latest | |
| needs: changed-files | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| build-type: [Custom, FullDebug] | |
| compiler: [gcc, clang] | |
| env: | |
| KRATOS_BUILD_TYPE: ${{ matrix.build-type }} | |
| KRATOS_CI_CHANGED_FILES: ${{needs.changed-files.outputs.files}} | |
| KRATOS_CI_APPLICATIONS: ".github/workflows/ci_apps_linux.json" | |
| KRATOS_CI_CORES: 4 # Current limits are 4 CPU and 16 GB Ram | |
| OMPI_MCA_rmaps_base_oversubscribe: 1 # Allow oversubscription for MPI (needed for OpenMPI >= 3.0) | |
| OMPI_MCA_btl_vader_single_copy_mechanism: none # Suppressing some annoying OpenMPI messages | |
| container: | |
| image: kratosmultiphysics/kratos-image-ci-ubuntu-22-04:latest | |
| options: --user 1001 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| # - name: Installing dependencies | |
| # => must be added to the docker container to avoid reinstalling it in every CI run | |
| - name: CI configuration | |
| shell: bash | |
| run: python3 kratos/python_scripts/testing/ci_utilities.py | |
| - name: Build | |
| shell: bash | |
| run: | | |
| if [ ${{ matrix.compiler }} = gcc ]; then | |
| export CC=/usr/bin/gcc-12 | |
| export CXX=/usr/bin/g++-12 | |
| export KRATOS_CMAKE_OPTIONS_FLAGS="-DUSE_EIGEN_MKL=ON -DUSE_EIGEN_FEAST=ON -DTRILINOS_EXCLUDE_AMESOS2_SOLVER=OFF" | |
| export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations -Wignored-qualifiers" | |
| elif [ ${{ matrix.compiler }} = clang ]; then | |
| export CC=/usr/bin/clang-14 | |
| export CXX=/usr/bin/clang++-14 | |
| export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations" | |
| export KRATOS_CMAKE_OPTIONS_FLAGS="-DTRILINOS_EXCLUDE_AMESOS2_SOLVER=OFF" | |
| else | |
| echo 'Unsupported compiler: ${{ matrix.compiler }}' | |
| exit 1 | |
| fi | |
| source /opt/intel/oneapi/setvars.sh | |
| cp .github/workflows/configure_core.sh configure.sh | |
| python3 kratos/python_scripts/testing/ci_utilities.py | |
| bash configure.sh | |
| rm -r ${GITHUB_WORKSPACE}/build | |
| - name: Build Dependencies | |
| shell: bash | |
| run: | | |
| if [ ${{ matrix.compiler }} = gcc ]; then | |
| export CC=/usr/bin/gcc-12 | |
| export CXX=/usr/bin/g++-12 | |
| export KRATOS_CMAKE_OPTIONS_FLAGS="-DMMG_ROOT=/external_libraries/mmg/mmg_5_5_1/ -DPMMG_ROOT=/external_libraries/ParMmg_5ffc6ad -DINCLUDE_PMMG=ON" | |
| export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations -Wignored-qualifiers" | |
| elif [ ${{ matrix.compiler }} = clang ]; then | |
| export CC=/usr/bin/clang-14 | |
| export CXX=/usr/bin/clang++-14 | |
| export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations" | |
| export KRATOS_CMAKE_OPTIONS_FLAGS="-DMMG_ROOT=/external_libraries/mmg/mmg_5_5_1/" | |
| else | |
| echo 'Unsupported compiler: ${{ matrix.compiler }}' | |
| exit 1 | |
| fi | |
| source /opt/intel/oneapi/setvars.sh | |
| cp .github/workflows/configure_dependencies.sh configure.sh | |
| bash configure.sh | |
| rm -r ${GITHUB_WORKSPACE}/build | |
| - name: Build Core Apps | |
| shell: bash | |
| run: | | |
| if [ ${{ matrix.compiler }} = gcc ]; then | |
| export CC=/usr/bin/gcc-12 | |
| export CXX=/usr/bin/g++-12 | |
| export KRATOS_CMAKE_OPTIONS_FLAGS="" | |
| export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations -Wignored-qualifiers" | |
| elif [ ${{ matrix.compiler }} = clang ]; then | |
| export CC=/usr/bin/clang-14 | |
| export CXX=/usr/bin/clang++-14 | |
| export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations" | |
| export KRATOS_CMAKE_OPTIONS_FLAGS="" | |
| else | |
| echo 'Unsupported compiler: ${{ matrix.compiler }}' | |
| exit 1 | |
| fi | |
| source /opt/intel/oneapi/setvars.sh | |
| cp .github/workflows/configure_core_applications.sh configure.sh | |
| bash configure.sh | |
| rm -r ${GITHUB_WORKSPACE}/build | |
| - name: Build Research Apps | |
| shell: bash | |
| run: | | |
| if [ ${{ matrix.compiler }} = gcc ]; then | |
| export CC=/usr/bin/gcc-12 | |
| export CXX=/usr/bin/g++-12 | |
| export KRATOS_CMAKE_OPTIONS_FLAGS="" | |
| export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations -Wignored-qualifiers" | |
| elif [ ${{ matrix.compiler }} = clang ]; then | |
| export CC=/usr/bin/clang-14 | |
| export CXX=/usr/bin/clang++-14 | |
| export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations" | |
| export KRATOS_CMAKE_OPTIONS_FLAGS="" | |
| else | |
| echo 'Unsupported compiler: ${{ matrix.compiler }}' | |
| exit 1 | |
| fi | |
| source /opt/intel/oneapi/setvars.sh | |
| cp .github/workflows/configure_research_applications.sh configure.sh | |
| bash configure.sh | |
| rm -r ${GITHUB_WORKSPACE}/build | |
| - name: Running C++ tests | |
| shell: bash | |
| run: | | |
| if [ ${{ matrix.compiler }} = gcc ]; then | |
| source /opt/intel/oneapi/setvars.sh | |
| fi | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }} | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs | |
| python3 kratos/python_scripts/testing/run_cpp_tests.py | |
| - name: Running python tests | |
| shell: bash | |
| run: | | |
| if [ ${{ matrix.compiler }} = gcc ]; then | |
| source /opt/intel/oneapi/setvars.sh | |
| fi | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }} | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs | |
| python3 kratos/python_scripts/testing/run_python_tests.py -v 2 -l nightly -c python3 | |
| - name: Prepare Parallel Env | |
| shell: bash | |
| run: | | |
| echo "localhost slots=2" >> ${GITHUB_WORKSPACE}/ci_hostfile | |
| - name: Running MPI C++ tests (2 Cores) | |
| shell: bash | |
| timeout-minutes : 10 | |
| run: | | |
| if [ ${{ matrix.compiler }} = gcc ]; then | |
| source /opt/intel/oneapi/setvars.sh | |
| fi | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }} | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs | |
| python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py --mpi_flags "--hostfile ${GITHUB_WORKSPACE}/ci_hostfile" -n 2 | |
| - name: Running MPI C++ tests (3 Cores) | |
| shell: bash | |
| timeout-minutes : 10 | |
| run: | | |
| if [ ${{ matrix.compiler }} = gcc ]; then | |
| source /opt/intel/oneapi/setvars.sh | |
| fi | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }} | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs | |
| python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py --mpi_flags "--hostfile ${GITHUB_WORKSPACE}/ci_hostfile" -n 3 | |
| - name: Running MPI C++ tests (4 Cores) | |
| shell: bash | |
| timeout-minutes : 10 | |
| run: | | |
| if [ ${{ matrix.compiler }} = gcc ]; then | |
| source /opt/intel/oneapi/setvars.sh | |
| fi | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }} | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs | |
| python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py --mpi_flags "--hostfile ${GITHUB_WORKSPACE}/ci_hostfile" -n 4 | |
| - name: Running Python MPI tests (2 Cores) | |
| shell: bash | |
| run: | | |
| if [ ${{ matrix.compiler }} = gcc ]; then | |
| source /opt/intel/oneapi/setvars.sh | |
| fi | |
| export OMP_NUM_THREADS=1 | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }} | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs | |
| python3 kratos/python_scripts/testing/run_python_mpi_tests.py --mpi_flags "--hostfile ${GITHUB_WORKSPACE}/ci_hostfile" -l mpi_nightly -n 2 | |
| - name: Running Python MPI tests (3 Cores) | |
| shell: bash | |
| run: | | |
| if [ ${{ matrix.compiler }} = gcc ]; then | |
| source /opt/intel/oneapi/setvars.sh | |
| fi | |
| export OMP_NUM_THREADS=1 | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }} | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs | |
| python3 kratos/python_scripts/testing/run_python_mpi_tests.py --mpi_flags "--hostfile ${GITHUB_WORKSPACE}/ci_hostfile" -l mpi_nightly -n 3 | |
| - name: Running Python MPI tests (4 Cores) | |
| shell: bash | |
| run: | | |
| if [ ${{ matrix.compiler }} = gcc ]; then | |
| source /opt/intel/oneapi/setvars.sh | |
| fi | |
| export OMP_NUM_THREADS=1 | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }} | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/${{ matrix.build-type }}/libs | |
| python3 kratos/python_scripts/testing/run_python_mpi_tests.py --mpi_flags "--hostfile ${GITHUB_WORKSPACE}/ci_hostfile" -l mpi_nightly -n 4 | |
| windows: | |
| runs-on: windows-2019 | |
| needs: changed-files | |
| env: | |
| KRATOS_BUILD_TYPE: Custom | |
| KRATOS_CI_CHANGED_FILES: ${{needs.changed-files.outputs.files}} | |
| KRATOS_CI_APPLICATIONS: ".github/workflows/ci_apps_windows.json" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.8' | |
| - name: CI configuration | |
| shell: bash | |
| run: python3 kratos/python_scripts/testing/ci_utilities.py | |
| - name: Download boost | |
| run: | | |
| $url = "https://archives.boost.io/release/1.74.0/source/boost_1_74_0.tar.gz" | |
| (New-Object System.Net.WebClient).DownloadFile($url, "$env:TEMP\boost.tar.gz") | |
| 7z.exe x "$env:TEMP\boost.tar.gz" -o"$env:TEMP\boostArchive" -y | Out-Null | |
| 7z.exe x "$env:TEMP\boostArchive" -o"$env:TEMP\boost" -y | Out-Null | |
| - name: Installing dependencies | |
| shell: cmd | |
| run: | | |
| pip install numpy | |
| pip install sympy | |
| pip install scipy | |
| pip install h5py | |
| pip install parameterized | |
| - name: Build | |
| shell: cmd | |
| run: | | |
| copy .\.github\workflows\configure.cmd | |
| python kratos/python_scripts/testing/ci_utilities.py | |
| configure.cmd | |
| - name: Running C++ tests | |
| shell: cmd | |
| run: | | |
| set PYTHONPATH=%PYTHONPATH%;%GITHUB_WORKSPACE%/bin/%KRATOS_BUILD_TYPE% | |
| set PATH=%PATH%;%GITHUB_WORKSPACE%/bin/%KRATOS_BUILD_TYPE%/libs | |
| python kratos/python_scripts/testing/run_cpp_tests.py | |
| - name: Running python tests | |
| shell: cmd | |
| run: | | |
| set PYTHONPATH=%PYTHONPATH%;%GITHUB_WORKSPACE%/bin/%KRATOS_BUILD_TYPE% | |
| set PATH=%PATH%;%GITHUB_WORKSPACE%/bin/%KRATOS_BUILD_TYPE%/libs | |
| python kratos/python_scripts/testing/run_python_tests.py -l nightly -c python | |
| centos: | |
| runs-on: ubuntu-latest | |
| needs: changed-files | |
| env: | |
| KRATOS_BUILD_TYPE: Custom | |
| KRATOS_CI_CHANGED_FILES: ${{needs.changed-files.outputs.files}} | |
| KRATOS_CI_APPLICATIONS: ".github/workflows/ci_apps_centos.json" | |
| ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION: true | |
| container: | |
| image: kratosmultiphysics/kratos-image-ci-centos7:latest | |
| options: --user 1001 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| # - name: Installing dependencies | |
| # => must be added to the docker container to avoid reinstalling it in every CI run | |
| - name: CI configuration | |
| shell: bash | |
| run: python3.8 kratos/python_scripts/testing/ci_utilities.py | |
| - name: Build | |
| run: | | |
| export KRATOS_CMAKE_CXX_FLAGS="-Werror -Wno-deprecated-declarations -Wignored-qualifiers" | |
| cp .github/workflows/centos_configure.sh centos_configure.sh | |
| bash centos_configure.sh | |
| - name: Running C++ tests | |
| run: | | |
| export PYTHONPATH=${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3.8 kratos/python_scripts/testing/run_cpp_tests.py | |
| - name: Running python tests | |
| run: | | |
| export PYTHONPATH=${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3.8 kratos/python_scripts/testing/run_python_tests.py -l nightly -c python3.8 | |
| ubuntu-core-without-unity: | |
| runs-on: ubuntu-latest | |
| needs: changed-files | |
| env: | |
| KRATOS_BUILD_TYPE: Custom | |
| KRATOS_CI_CHANGED_FILES: ${{needs.changed-files.outputs.files}} | |
| KRATOS_CI_APPLICATIONS: "ONLY_CORE" | |
| OMPI_MCA_rmaps_base_oversubscribe: 1 # Allow oversubscription for MPI (needed for OpenMPI >= 3.0) | |
| container: | |
| image: kratosmultiphysics/kratos-image-ci-ubuntu-22-04:latest | |
| options: --user 1001 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: CI configuration | |
| shell: bash | |
| run: python3 kratos/python_scripts/testing/ci_utilities.py | |
| - name: Build | |
| shell: bash | |
| run: | | |
| export CC=/usr/bin/clang-14 | |
| export CXX=/usr/bin/clang++-14 | |
| export KRATOS_SOURCE="${KRATOS_SOURCE:-${PWD}}" | |
| export KRATOS_BUILD="${KRATOS_SOURCE}/build" | |
| export KRATOS_APP_DIR="${KRATOS_SOURCE}/applications" | |
| export PYTHON_EXECUTABLE="/usr/bin/python3" | |
| export KRATOS_INSTALL_PYTHON_USING_LINKS=ON | |
| add_app () { | |
| export KRATOS_APPLICATIONS="${KRATOS_APPLICATIONS}$1;" | |
| } | |
| add_app ${KRATOS_APP_DIR}/LinearSolversApplication; | |
| add_app ${KRATOS_APP_DIR}/MetisApplication; | |
| add_app ${KRATOS_APP_DIR}/TrilinosApplication; | |
| source /opt/intel/oneapi/setvars.sh | |
| # Configure | |
| cmake -H"${KRATOS_SOURCE}" -B"${KRATOS_BUILD}/${KRATOS_BUILD_TYPE}" \ | |
| -DUSE_MPI=ON \ | |
| -DTRILINOS_INCLUDE_DIR="/usr/include/trilinos" \ | |
| -DTRILINOS_LIBRARY_DIR="/usr/lib/x86_64-linux-gnu" \ | |
| -DTRILINOS_LIBRARY_PREFIX="trilinos_" \ | |
| -DKRATOS_USE_PCH=ON | |
| # Build | |
| # Please do not use more than 2 cores or it will produce an out of heap memory error | |
| cmake --build "${KRATOS_BUILD}/${KRATOS_BUILD_TYPE}" --target install -- -j2 | |
| - name: Running C++ tests | |
| shell: bash | |
| run: | | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_cpp_tests.py | |
| - name: Running python tests | |
| shell: bash | |
| run: | | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_python_tests.py -l nightly -c python3 | |
| - name: Running MPI C++ tests (2 Cores) | |
| shell: bash | |
| timeout-minutes : 10 | |
| run: | | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py -n 2 | |
| - name: Running MPI C++ tests (3 Cores) | |
| shell: bash | |
| timeout-minutes : 10 | |
| run: | | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py -n 3 | |
| - name: Running MPI C++ tests (4 Cores) | |
| shell: bash | |
| timeout-minutes : 10 | |
| run: | | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py -n 4 | |
| - name: Running Python MPI tests (2 Cores) | |
| shell: bash | |
| run: | | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 2 | |
| - name: Running Python MPI tests (3 Cores) | |
| shell: bash | |
| run: | | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 3 | |
| - name: Running Python MPI tests (4 Cores) | |
| shell: bash | |
| run: | | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 4 | |
| windows-core-without-unity: | |
| runs-on: windows-2019 | |
| needs: changed-files | |
| env: | |
| KRATOS_BUILD_TYPE: Custom | |
| KRATOS_CI_CHANGED_FILES: ${{needs.changed-files.outputs.files}} | |
| KRATOS_CI_APPLICATIONS: "ONLY_CORE" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.8' | |
| - name: CI configuration | |
| shell: bash | |
| run: python3 kratos/python_scripts/testing/ci_utilities.py | |
| - name: Download boost | |
| run: | | |
| $url = "https://archives.boost.io/release/1.74.0/source/boost_1_74_0.tar.gz" | |
| (New-Object System.Net.WebClient).DownloadFile($url, "$env:TEMP\boost.tar.gz") | |
| 7z.exe x "$env:TEMP\boost.tar.gz" -o"$env:TEMP\boostArchive" -y | Out-Null | |
| 7z.exe x "$env:TEMP\boostArchive" -o"$env:TEMP\boost" -y | Out-Null | |
| - name: Installing dependencies | |
| shell: cmd | |
| run: | | |
| pip install numpy | |
| pip install sympy | |
| pip install scipy | |
| - name: Build | |
| shell: cmd | |
| run: | | |
| call "C:\Program Files (x86)\Microsoft Visual Studio\2019\Enterprise\VC\Auxiliary\Build\vcvarsall.bat" x64 || goto :error | |
| set CC=cl.exe | |
| set CXX=cl.exe | |
| set KRATOS_SOURCE=%cd% | |
| set KRATOS_BUILD=%cd%\build | |
| set KRATOS_APP_DIR=applications | |
| set KRATOS_APPLICATIONS=%KRATOS_APP_DIR%\LinearSolversApplication; | |
| del /F /Q "%KRATOS_BUILD%\%KRATOS_BUILD_TYPE%\cmake_install.cmake" | |
| del /F /Q "%KRATOS_BUILD%\%KRATOS_BUILD_TYPE%\CMakeCache.txt" | |
| del /F /Q "%KRATOS_BUILD%\%KRATOS_BUILD_TYPE%\CMakeFiles" | |
| cmake ^ | |
| -G"Visual Studio 16 2019" ^ | |
| -H"%KRATOS_SOURCE%" ^ | |
| -B"%KRATOS_BUILD%\%KRATOS_BUILD_TYPE%" ^ | |
| -DBOOST_ROOT="%TEMP%\boost" ^ | |
| -DCMAKE_CXX_FLAGS="/Od /we4661 /we4804 /WX /wd4996" ^ | |
| -DKRATOS_USE_PCH=ON ^ | |
| -DFORCE_LOCAL_ZLIB_COMPILATION=ON || goto :error | |
| cmake --build "%KRATOS_BUILD%\%KRATOS_BUILD_TYPE%" --target all_build -- /property:configuration=%KRATOS_BUILD_TYPE% /p:Platform=x64 || goto :error | |
| cmake --build "%KRATOS_BUILD%\%KRATOS_BUILD_TYPE%" --target install -- /property:configuration=%KRATOS_BUILD_TYPE% /p:Platform=x64 || goto :error | |
| goto :EOF | |
| :error | |
| echo Failed with error #%errorlevel%. | |
| exit /b %errorlevel% | |
| - name: Running C++ tests | |
| shell: cmd | |
| run: | | |
| set PYTHONPATH=%PYTHONPATH%;%GITHUB_WORKSPACE%/bin/%KRATOS_BUILD_TYPE% | |
| set PATH=%PATH%;%GITHUB_WORKSPACE%/bin/%KRATOS_BUILD_TYPE%/libs | |
| python kratos/python_scripts/testing/run_cpp_tests.py | |
| - name: Running python tests | |
| shell: cmd | |
| run: | | |
| set PYTHONPATH=%PYTHONPATH%;%GITHUB_WORKSPACE%/bin/%KRATOS_BUILD_TYPE% | |
| set PATH=%PATH%;%GITHUB_WORKSPACE%/bin/%KRATOS_BUILD_TYPE%/libs | |
| python kratos/python_scripts/testing/run_python_tests.py -l nightly -c python | |
| ubuntu-intel-legacy: | |
| runs-on: ubuntu-latest | |
| env: | |
| KRATOS_BUILD_TYPE: Custom | |
| OMPI_MCA_rmaps_base_oversubscribe: 1 # Allow oversubscription for MPI (needed for OpenMPI >= 3.0) | |
| OMPI_MCA_btl_vader_single_copy_mechanism: none # suppressing some annoying OpenMPI messages | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 # required since for now running as root | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 # required since for now running as root | |
| container: | |
| image: kratosmultiphysics/kratos-image-ci-ubuntu-22-04:latest | |
| # options: --user 1001 # must run as root to install the intel compiler | |
| steps: | |
| - uses: actions/checkout@v4 | |
| # - name: Installing dependencies | |
| # => must be added to the docker container to avoid reinstalling it in every CI run | |
| - name: Install intel compiler | |
| shell: bash | |
| run: sudo apt-get install -y --no-install-recommends intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic | |
| - name: Build | |
| shell: bash | |
| run: | | |
| export CC=icc | |
| export CXX=icpc | |
| source /opt/intel/oneapi/setvars.sh | |
| cp .github/workflows/intel_configure.sh configure.sh | |
| bash configure.sh | |
| - name: Running C++ tests | |
| shell: bash | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_cpp_tests.py | |
| - name: Running python tests | |
| shell: bash | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_python_tests.py -l nightly -c python3 | |
| - name: Running MPI C++ tests (2 Cores) | |
| shell: bash | |
| timeout-minutes : 10 | |
| run: | | |
| export PYTHONPATH= | |
| export LD_LIBRARY_PATH= | |
| source /opt/intel/oneapi/setvars.sh | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py -n 2 | |
| - name: Running MPI C++ tests (3 Cores) | |
| shell: bash | |
| timeout-minutes : 10 | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py -n 3 | |
| - name: Running MPI C++ tests (4 Cores) | |
| shell: bash | |
| timeout-minutes : 10 | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py -n 4 | |
| - name: Running Python MPI tests (2 Cores) | |
| shell: bash | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 2 | |
| - name: Running Python MPI tests (3 Cores) | |
| shell: bash | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 3 | |
| - name: Running Python MPI tests (4 Cores) | |
| shell: bash | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 4 | |
| ubuntu-intel: | |
| runs-on: ubuntu-latest | |
| needs: changed-files | |
| env: | |
| KRATOS_BUILD_TYPE: Custom | |
| KRATOS_CI_CHANGED_FILES: ${{needs.changed-files.outputs.files}} | |
| KRATOS_CI_APPLICATIONS: ".github/workflows/ci_apps_intel.json" | |
| OMPI_MCA_rmaps_base_oversubscribe: 1 # Allow oversubscription for MPI (needed for OpenMPI >= 3.0) | |
| OMPI_MCA_btl_vader_single_copy_mechanism: none # suppressing some annoying OpenMPI messages | |
| container: | |
| image: kratosmultiphysics/kratos-image-ci-ubuntu-22-04:latest | |
| options: --user 1001 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| # - name: Installing dependencies | |
| # => must be added to the docker container to avoid reinstalling it in every CI run | |
| - name: CI configuration | |
| shell: bash | |
| run: python3 kratos/python_scripts/testing/ci_utilities.py | |
| - name: Build | |
| shell: bash | |
| run: | | |
| export CC=icx | |
| export CXX=icpx | |
| source /opt/intel/oneapi/setvars.sh | |
| cp .github/workflows/intel_configure.sh configure.sh | |
| bash configure.sh | |
| - name: Running C++ tests | |
| shell: bash | |
| continue-on-error: true # TODO segfaults in cpp-tests | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_cpp_tests.py | |
| - name: Running python tests | |
| shell: bash | |
| continue-on-error: true # TODO segfaults in cpp-tests | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_python_tests.py -l nightly -c python3 | |
| - name: Running MPI C++ tests (2 Cores) | |
| shell: bash | |
| timeout-minutes : 10 | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py -n 2 | |
| - name: Running MPI C++ tests (3 Cores) | |
| shell: bash | |
| timeout-minutes : 10 | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py -n 3 | |
| - name: Running MPI C++ tests (4 Cores) | |
| shell: bash | |
| timeout-minutes : 10 | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_cpp_mpi_tests.py -n 4 | |
| - name: Running Python MPI tests (2 Cores) | |
| shell: bash | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| export OMP_NUM_THREADS=1 | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 2 | |
| - name: Running Python MPI tests (3 Cores) | |
| shell: bash | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| export OMP_NUM_THREADS=1 | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 3 | |
| - name: Running Python MPI tests (4 Cores) | |
| shell: bash | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| export OMP_NUM_THREADS=1 | |
| export PYTHONPATH=${PYTHONPATH}:${GITHUB_WORKSPACE}/bin/Custom | |
| export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${GITHUB_WORKSPACE}/bin/Custom/libs | |
| python3 kratos/python_scripts/testing/run_python_mpi_tests.py -l mpi_nightly -n 4 |