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smash_alternate_implementations

An alternate implementation of the tools available in sourmash.

Building

make

Available tools

  1. prefetch
  2. compare
  3. gather

Usages

All tool usages are available using --help flag.

compare output format

  1. Index of query
  2. Name of query
  3. MD5 of query
  4. Index of match
  5. Name of match
  6. MD5 of match
  7. Jaccard
  8. Containment(query, target)
  9. Containment(target, query)

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Implement prefetch in cpp to investigate potential speedups

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