The grimoire pacakage contains libraries and scripts for Biological sequence analysis.
The current developent is highly volatile and not ready for public consumption.
The code is designed with the folllowing analyses in mind:
- Gene structure prediction using hidden Markov models and variants
- Genome annotation quality control
- Structure-function relationships in sequences (e.g. IME)
Program names are themed after spell names from the classic RPG "Wizardry: Proving Grounds of the Mad Overlord."
| Name | Meaning | Function |
|---|---|---|
| calfo | x-ray | genome annotation reporter |
| kandi | locate | curses-based genome annotation viewer |
| latumapic | identify | svg-based static annotation viewer |
| haman | change | genome slicer |
| milwa | light | state builder |
| lomilwa | more light | hmm assembler |
| dumapic | clarity | hmm grapher |
| halito | fire | basic hmm decoder |
| mahalito | big fire | 2-pass gene decoder |
| morlis | fear | annotation comparer (simple) |
| mogref | iron | sequence generator |
| mamorlis | great fear | (planned complex annotation comparer) |
| mahaman | change | (planned multi-genome slicer) |
| malor | apport | (planned genome lifter) |
| lahalito | torch | (planned full genome decoder) |
| tiltowait | explosion | (planned multi-genome decoder) |
| zilwan | dispel | (planned profile/alignment decoder) |
| molito | spark storm | (planned recursive intron decoder) |
| porfic | shield | (planned intron trainer for molito) |
- Ian Korf (iankorf)
- Hannah Lyman (hslyman)
- Alex Kramer (aklreaxmer)
- Qijia Liu (joyliu-q)
- Jack Yu (Angraygs)
Thanks to M. O. Trebor and E. W. Werdna for inspiration.