Version 0.2.4

Command line interface improvements:

• Help/usage text is better formatted and more descriptive
• Values provided for optional arguments are checked to ensure they are the correct type and within an expected range
• New optional arguments to specify molarity of primers and probes

Report improvements:

• Better formatting for oligo site seqs in PCR_results and oligo site variants in variant_report: lower case bases for mismatches, base in parentheses for insertions, and dashes for deletions

Error handling:

• Checks that input assay CSV file and genomes FASTA file exist and are not empty
• Checks that output directory exists
• Checks that oligo seqs provided in assay CSV file contain only recognized IUPAC nucleotide codes
• Fixed bug raising key value errors when missed_seqs_report data frame was empty

Version 0.1.0

v0.1.0

Update PCR_strainer.py