Note

A blog post for this replication is available here.

3D Convolutional neural networks-based segmentation to acquire quantitative criteria of the nucleus during mouse embryogenesis.

Tags: 3D image segmentation, Mask R-CNN, fluorescense microscopy, live cell data

Paper Code Dataset Planning

Reproducibility Assignment for TU Delft MSc. CS4240 "Deep Learning" (2023/24). Group consists of:

• Ugo Covielers-Munzi (MSc Aerospace Engineering, Control and Simulation)
• Aral de Moor
• Dani Rogmans (MSc Computer Science)
• Jonathan van Zyl (MSc Aerospace Engineering, Control and Simulation)

Replication Package

Our replication code is under replication directory, as well as an accompanying requirements.txt.