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Rename bounding_box to cell_vectors consistently #312

Rename bounding_box to cell_vectors consistently

Rename bounding_box to cell_vectors consistently #312

Triggered via pull request November 2, 2024 17:41
Status Failure
Total duration 2m 50s
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on: pull_request
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7 errors and 3 notices
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
undefined binding 'AtomsBase.bounding_box' in `@docs` block in src/apireference.md:25-37 ```@docs bounding_box set_bounding_box! periodicity set_periodicity! cell set_cell! n_dimensions atomkeys hasatomkey chemical_formula visualize_ascii ```
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
undefined binding 'AtomsBase.set_bounding_box!' in `@docs` block in src/apireference.md:25-37 ```@docs bounding_box set_bounding_box! periodicity set_periodicity! cell set_cell! n_dimensions atomkeys hasatomkey chemical_formula visualize_ascii ```
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/tutorial.md:184-186 ```@example system bounding_box(hydrogen) ``` exception = UndefVarError: `bounding_box` not defined in `Main.__atexample__named__system` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] top-level scope @ tutorial.md:185 [2] eval @ ./boot.jl:430 [inlined] [3] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:522 [8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:632 [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
Cannot resolve @ref for md"[`AtomsBase.bounding_box(cell)`](@ref)" in src/interface.md. - No docstring found in doc for binding `AtomsBase.bounding_box`. - No docstring found in doc for binding `AtomsBase.bounding_box`.
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
Cannot resolve @ref for md"[`set_bounding_box!(cell, bb)`](@ref)" in src/interface.md. - No docstring found in doc for binding `AtomsBase.set_bounding_box!`. - No docstring found in doc for binding `Main.set_bounding_box!`.
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
1 docstring not included in the manual: AtomsBase.cell_vectors These are docstrings in the checked modules (configured with the modules keyword) that are not included in canonical @docs or @autodocs blocks.
Documentation
Process completed with exit code 1.
Julia 1.6 - Core
[setup-julia] If you are testing 1.6 as a Long Term Support (lts) version, consider using the new "lts" version specifier instead of "1.6" explicitly, which will automatically resolve the current lts.
Julia 1.6 - AtomsBaseTesting
[setup-julia] If you are testing 1.6 as a Long Term Support (lts) version, consider using the new "lts" version specifier instead of "1.6" explicitly, which will automatically resolve the current lts.
[julia-buildpkg] Caching of the julia depot was not detected
Consider using `julia-actions/cache` to speed up runs https://github.com/julia-actions/cache. To ignore, set input `ignore-no-cache: true`