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Lab_Abcompartment

-- codes to fit 20kPC1 models

1. System requirements

  • R 3.6.1

2. Installation guide

No installation needed. Directly run work.sh

3. Demo

Input:

  • chr18.0_5M.20k.oe.matrix
  • chr18.0_5M.genome.20kb.TSS.count.bed

Output:

  • chr18.0_5M.20k.PC1.txt

4. Instructions for use

Change the hard-coded paths in the code to your own paths where you place the input and output files

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